Information for 3-CAGCCGCGGT (Motif 9)

G T A C G C T A T C A G T G A C T G A C T C A G A T G C C A T G C T A G A C G T
Reverse Opposite:
T G C A G A T C G T A C T A C G A G T C A C T G A C T G A G T C C G A T A C T G
p-value:1e-9
log p-value:-2.257e+01
Information Content per bp:1.689
Number of Target Sequences with motif60.0
Percentage of Target Sequences with motif7.43%
Number of Background Sequences with motif1444.3
Percentage of Background Sequences with motif2.95%
Average Position of motif in Targets51.8 +/- 28.3bp
Average Position of motif in Background50.5 +/- 28.6bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0151.1_Myf6_2/Jaspar

Match Rank:1
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----CAGCCGCGGT
AGCAACAGCCGCACC
 A C G T A C G T A C G T A C G T A C G T G T A C G C T A T C A G T G A C T G A C T C A G A T G C C A T G C T A G A C G T
T C G A T A C G T G A C T C G A T G C A G A T C T C G A C T A G T G A C T A G C A T C G T A G C C T G A T G A C G A T C

NHLH1/MA0048.2/Jaspar

Match Rank:2
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CAGCCGCGGT
CGCAGCTGCG--
 A C G T A C G T G T A C G C T A T C A G T G A C T G A C T C A G A T G C C A T G C T A G A C G T
T G A C C T A G A T G C T C G A A T C G T A G C A C G T A C T G A G T C A C T G A C G T A C G T

POL006.1_BREu/Jaspar

Match Rank:3
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CAGCCGCGGT
--GGCGCGCT
 G T A C G C T A T C A G T G A C T G A C T C A G A T G C C A T G C T A G A C G T
A C G T A C G T C T A G T A C G A G T C A C T G A G T C A T C G A T G C A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-CAGCCGCGGT
CCAGACRSVB-
 A C G T G T A C G C T A T C A G T G A C T G A C T C A G A T G C C A T G C T A G A C G T
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CAGCCGCGGT
NCAGCTGCTG-
 A C G T G T A C G C T A T C A G T G A C T G A C T C A G A T G C C A T G C T A G A C G T
T C G A A G T C C G T A A T C G A T G C C G A T A C T G A G T C A G C T A C T G A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:6
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CAGCCGCGGT
CAGCC-----
 G T A C G C T A T C A G T G A C T G A C T C A G A T G C C A T G C T A G A C G T
T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-CAGCCGCGGT
BCAGACWA---
 A C G T G T A C G C T A T C A G T G A C T G A C T C A G A T G C C A T G C T A G A C G T
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:8
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--CAGCCGCGGT
AGCAGCTGCTNN
 A C G T A C G T G T A C G C T A T C A G T G A C T G A C T C A G A T G C C A T G C T A G A C G T
C T G A T C A G A G T C C G T A A T C G A T G C C G A T A C T G A G T C G A C T A T C G A G T C

Myog/MA0500.1/Jaspar

Match Rank:9
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--CAGCCGCGGT
GACAGCTGCAG-
 A C G T A C G T G T A C G C T A T C A G T G A C T G A C T C A G A T G C C A T G C T A G A C G T
T C A G T C G A A G T C C G T A A C T G T A G C A C G T A C T G T A G C C T G A T A C G A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-CAGCCGCGGT
CCAGACAG---
 A C G T G T A C G C T A T C A G T G A C T G A C T C A G A T G C C A T G C T A G A C G T
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T