Information for 3-TCCCTTTTAA (Motif 30)

A C G T A G T C A G T C A G T C C G A T A C G T A G C T A G C T T C G A C G T A
Reverse Opposite:
C G A T A G C T T C G A C T G A T G C A C G T A C T A G C T A G C T A G G T C A
p-value:1e-7
log p-value:-1.812e+01
Information Content per bp:1.825
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.94%
Number of Background Sequences with motif127.8
Percentage of Background Sequences with motif0.26%
Average Position of motif in Targets41.9 +/- 27.1bp
Average Position of motif in Background47.9 +/- 33.2bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TATA-Box(TBP)/Promoter/Homer

Match Rank:1
Score:0.71
Offset:2
Orientation:forward strand
Alignment:TCCCTTTTAA----
--CCTTTTATAGNC
 A C G T A G T C A G T C A G T C C G A T A C G T A G C T A G C T T C G A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C

PB0184.1_Tbp_2/Jaspar

Match Rank:2
Score:0.66
Offset:1
Orientation:forward strand
Alignment:TCCCTTTTAA------
-CCGATTTAAGCGACC
 A C G T A G T C A G T C A G T C C G A T A C G T A G C T A G C T T C G A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T T G A C A T G C A T C G C G T A G A C T C G A T C G A T G T C A G C T A A T C G T A G C A C T G G C T A A C G T G T A C

TCF7L2/MA0523.1/Jaspar

Match Rank:3
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:TCCCTTTTAA----
TNCCTTTGATCTTN
 A C G T A G T C A G T C A G T C C G A T A C G T A G C T A G C T T C G A C G T A A C G T A C G T A C G T A C G T
C A G T A G C T A G T C A G T C A G C T A G C T A C G T A T C G C G T A C G A T T A G C G A C T A G C T G A C T

Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer

Match Rank:4
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:TCCCTTTTAA--
TNCCTTTGATGT
 A C G T A G T C A G T C A G T C C G A T A C G T A G C T A G C T T C G A C G T A A C G T A C G T
C A G T A T G C A G T C A G T C A G C T A C G T A C G T T A C G C G T A C G A T T A C G G A C T

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:TCCCTTTTAA--
--CCTTTGATGT
 A C G T A G T C A G T C A G T C C G A T A C G T A G C T A G C T T C G A C G T A A C G T A C G T
A C G T A C G T A T G C A G T C A C G T A C G T A C G T A T C G C G T A C G A T T A C G G A C T

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:6
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:TCCCTTTTAA--
--CCTTTGAWGT
 A C G T A G T C A G T C A G T C C G A T A C G T A G C T A G C T T C G A C G T A A C G T A C G T
A C G T A C G T A T G C A G T C A C G T A C G T A C G T A C T G C G T A C G T A A T C G A C G T

PB0083.1_Tcf7_1/Jaspar

Match Rank:7
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--TCCCTTTTAA-----
NNTTCCTTTGATCTNNA
 A C G T A C G T A C G T A G T C A G T C A G T C C G A T A C G T A G C T A G C T T C G A C G T A A C G T A C G T A C G T A C G T A C G T
C G A T C G A T C A G T A G C T A G T C A G T C G C A T G A C T C G A T A T C G C G T A C G A T T A G C G C A T C G T A C G A T T G C A

PB0082.1_Tcf3_1/Jaspar

Match Rank:8
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--TCCCTTTTAA-----
NNTTCCTTTGATCTANA
 A C G T A C G T A C G T A G T C A G T C A G T C C G A T A C G T A G C T A G C T T C G A C G T A A C G T A C G T A C G T A C G T A C G T
C G A T C G A T C G A T A G C T A G T C A G T C G C A T G A C T C G A T A T C G C G T A C G A T T A G C G C A T C G T A C G A T C T G A

HLTF/MA0109.1/Jaspar

Match Rank:9
Score:0.60
Offset:0
Orientation:forward strand
Alignment:TCCCTTTTAA
AACCTTATAT
 A C G T A G T C A G T C A G T C C G A T A C G T A G C T A G C T T C G A C G T A
C G T A G C T A G T A C A G T C C G A T A C G T C G T A A C G T T C G A G A C T

PB0040.1_Lef1_1/Jaspar

Match Rank:10
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--TCCCTTTTAA-----
AATCCCTTTGATCTATC
 A C G T A C G T A C G T A G T C A G T C A G T C C G A T A C G T A G C T A G C T T C G A C G T A A C G T A C G T A C G T A C G T A C G T
C T A G C T G A C G A T A G T C A G T C A G T C G A C T G A C T C G A T A T C G C G T A C G A T T A G C G C A T C G T A C G A T T G A C