Information for 18-AGCAAKGGCHGMGACC (Motif 29)

G T C A A T C G A G T C C G T A C T G A C A G T A C T G A C T G A G T C G T A C A T C G G T A C C T A G T G C A A G T C A G T C
Reverse Opposite:
C T A G A C T G A C G T A G T C C A T G A T G C C A G T A C T G T A G C A G T C G T C A G A C T A C G T A C T G A T G C A C G T
p-value:1e-8
log p-value:-2.018e+01
Information Content per bp:1.744
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.66%
Number of Background Sequences with motif3.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets63.4 +/- 17.2bp
Average Position of motif in Background29.4 +/- 13.6bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:AGCAAKGGCHGMGACC
-TCAGNGAGCGTGAC-
 G T C A A T C G A G T C C G T A C T G A C A G T A C T G A C T G A G T C G T A C A T C G G T A C C T A G T G C A A G T C A G T C
A C G T A C G T T A G C T C G A A T C G T A C G T C A G C T G A A T C G A G T C C T A G G A C T C T A G C T G A T G A C A C G T

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:2
Score:0.58
Offset:4
Orientation:forward strand
Alignment:AGCAAKGGCHGMGACC--
----AGGTCANTGACCTN
 G T C A A T C G A G T C C G T A C T G A C A G T A C T G A C T G A G T C G T A C A T C G G T A C C T A G T G C A A G T C A G T C A C G T A C G T
A C G T A C G T A C G T A C G T T C G A C A T G C A T G A C G T A T G C T C G A C T G A A G C T T A C G T G C A G T A C G A T C A G C T A G T C

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:3
Score:0.55
Offset:2
Orientation:forward strand
Alignment:AGCAAKGGCHGMGACC
--CAAGGHCANV----
 G T C A A T C G A G T C C G T A C T G A C A G T A C T G A C T G A G T C G T A C A T C G G T A C C T A G T G C A A G T C A G T C
A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G A C G T A C G T A C G T A C G T

Sp1(Zf)/Promoter/Homer

Match Rank:4
Score:0.51
Offset:6
Orientation:forward strand
Alignment:AGCAAKGGCHGMGACC--
------GGCCCCGCCCCC
 G T C A A T C G A G T C C G T A C T G A C A G T A C T G A C T G A G T C G T A C A T C G G T A C C T A G T G C A A G T C A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A C G C T A G A T G C G A T C G T A C A G T C C T A G A G T C A G T C A G T C G T A C A G T C

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:5
Score:0.51
Offset:0
Orientation:forward strand
Alignment:AGCAAKGGCHGMGACC
NTCAAGGTCA------
 G T C A A T C G A G T C C G T A C T G A C A G T A C T G A C T G A G T C G T A C A T C G G T A C C T A G T G C A A G T C A G T C
A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:6
Score:0.51
Offset:0
Orientation:forward strand
Alignment:AGCAAKGGCHGMGACC
BTCAAGGTCA------
 G T C A A T C G A G T C C G T A C T G A C A G T A C T G A C T G A G T C G T A C A T C G G T A C C T A G T G C A A G T C A G T C
A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T

KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer

Match Rank:7
Score:0.50
Offset:6
Orientation:reverse strand
Alignment:AGCAAKGGCHGMGACC--
------GGCCACRCCCMK
 G T C A A T C G A G T C C G T A C T G A C A G T A C T G A C T G A G T C G T A C A T C G G T A C C T A G T G C A A G T C A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T A G C T A G T G A C G T A C T G C A A G T C C T A G A G T C A G T C A G T C G T C A C A T G

REST/MA0138.2/Jaspar

Match Rank:8
Score:0.50
Offset:-6
Orientation:forward strand
Alignment:------AGCAAKGGCHGMGACC
TTCAGCACCATGGACAGCGCC-
 A C G T A C G T A C G T A C G T A C G T A C G T G T C A A T C G A G T C C G T A C T G A C A G T A C T G A C T G A G T C G T A C A T C G G T A C C T A G T G C A A G T C A G T C
C A G T A G C T G A T C T C G A T A C G A T G C C G T A A T G C G A T C G C T A G A C T C T A G T C A G G T C A A T G C G C T A T C A G G T A C C A T G T A G C G A T C A C G T

Nr5a2/MA0505.1/Jaspar

Match Rank:9
Score:0.50
Offset:-3
Orientation:forward strand
Alignment:---AGCAAKGGCHGMGACC
AAGTTCAAGGTCAGC----
 A C G T A C G T A C G T G T C A A T C G A G T C C G T A C T G A C A G T A C T G A C T G A G T C G T A C A T C G G T A C C T A G T G C A A G T C A G T C
T C G A C T G A C T A G A G C T G A C T T A G C G T C A C T G A C T A G A C T G G A C T A G T C C G T A A C T G A T G C A C G T A C G T A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:10
Score:0.50
Offset:0
Orientation:reverse strand
Alignment:AGCAAKGGCHGMGACC
AACAAAGG--------
 G T C A A T C G A G T C C G T A C T G A C A G T A C T G A C T G A G T C G T A C A T C G G T A C C T A G T G C A A G T C A G T C
T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T