Information for 14-TTGGMCATMGAKGTTG (Motif 22)

A C G T A C G T C T A G A C T G G T A C T A G C C T G A A C G T G T C A A C T G C G T A A C G T A C T G A G C T A C G T A C T G
Reverse Opposite:
A G T C C G T A C T G A G T A C G T C A G A C T A G T C A C G T G T C A A G C T A C T G A C T G G T A C A G T C G T C A C G T A
p-value:1e-9
log p-value:-2.220e+01
Information Content per bp:1.781
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.66%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets32.0 +/- 8.5bp
Average Position of motif in Background26.0 +/- 6.9bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC/MA0161.1/Jaspar

Match Rank:1
Score:0.55
Offset:0
Orientation:forward strand
Alignment:TTGGMCATMGAKGTTG
TTGGCA----------
 A C G T A C G T C T A G A C T G G T A C T A G C C T G A A C G T G T C A A C T G C G T A A C G T A C T G A G C T A C G T A C T G
G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-TTGGMCATMGAKGTTG
NTTGGCANN--------
 A C G T A C G T A C G T C T A G A C T G G T A C T A G C C T G A A C G T G T C A A C T G C G T A A C G T A C T G A G C T A C G T A C T G
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:3
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--TTGGMCATMGAKGTTG
NNTTGGCANN--------
 A C G T A C G T A C G T A C G T C T A G A C T G G T A C T A G C C T G A A C G T G T C A A C T G C G T A A C G T A C T G A G C T A C G T A C T G
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Tcf21/MA0832.1/Jaspar

Match Rank:4
Score:0.47
Offset:3
Orientation:forward strand
Alignment:TTGGMCATMGAKGTTG-
---GCAACAGCTGTTGT
 A C G T A C G T C T A G A C T G G T A C T A G C C T G A A C G T G T C A A C T G C G T A A C G T A C T G A G C T A C G T A C T G A C G T
A C G T A C G T A C G T T C A G G A T C C T G A G T C A A G T C G T C A A C T G A G T C A C G T A C T G A C G T G A C T T C A G A G C T

POL004.1_CCAAT-box/Jaspar

Match Rank:5
Score:0.47
Offset:-3
Orientation:reverse strand
Alignment:---TTGGMCATMGAKGTTG
TGATTGGCTANN-------
 A C G T A C G T A C G T A C G T A C G T C T A G A C T G G T A C T A G C C T G A A C G T G T C A A C T G C G T A A C G T A C T G A G C T A C G T A C T G
A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFY(CCAAT)/Promoter/Homer

Match Rank:6
Score:0.47
Offset:-4
Orientation:reverse strand
Alignment:----TTGGMCATMGAKGTTG
CCGATTGGCT----------
 A C G T A C G T A C G T A C G T A C G T A C G T C T A G A C T G G T A C T A G C C T G A A C G T G T C A A C T G C G T A A C G T A C T G A G C T A C G T A C T G
A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0117.1_Eomes_2/Jaspar

Match Rank:7
Score:0.46
Offset:4
Orientation:forward strand
Alignment:TTGGMCATMGAKGTTG----
----GCGGAGGTGTCGCCTC
 A C G T A C G T C T A G A C T G G T A C T A G C C T G A A C G T G T C A A C T G C G T A A C G T A C T G A G C T A C G T A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T A C G A T C G T C A G C T A G C T G A T A C G A T C G A G C T T C A G C G A T G A T C A C T G T A G C A G T C A G C T T A G C

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.46
Offset:-1
Orientation:reverse strand
Alignment:-TTGGMCATMGAKGTTG
CTTGGCAA---------
 A C G T A C G T A C G T C T A G A C T G G T A C T A G C C T G A A C G T G T C A A C T G C G T A A C G T A C T G A G C T A C G T A C T G
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

GFY(?)/Promoter/Homer

Match Rank:9
Score:0.45
Offset:2
Orientation:reverse strand
Alignment:TTGGMCATMGAKGTTG
--GGGAATTGTAGT--
 A C G T A C G T C T A G A C T G G T A C T A G C C T G A A C G T G T C A A C T G C G T A A C G T A C T G A G C T A C G T A C T G
A C G T A C G T C A T G T C A G T C A G T C G A T C G A G C A T A C G T A C T G A C G T C T G A A T C G A C G T A C G T A C G T

MYF6/MA0667.1/Jaspar

Match Rank:10
Score:0.45
Offset:5
Orientation:reverse strand
Alignment:TTGGMCATMGAKGTTG
-----AACAGCTGTT-
 A C G T A C G T C T A G A C T G G T A C T A G C C T G A A C G T G T C A A C T G C G T A A C G T A C T G A G C T A C G T A C T G
A C G T A C G T A C G T A C G T A C G T T C G A C T G A A T G C C G T A T C A G A G T C A G C T A C T G A G C T A G C T A C G T