Information for 7-CCGACATAGA (Motif 9)

T A G C A G T C A C T G C G T A A G T C G T C A A G C T C G T A C T A G G T C A
Reverse Opposite:
A C G T G A T C C G A T C T G A A C G T A C T G A C G T G T A C T C A G A T C G
p-value:1e-12
log p-value:-2.932e+01
Information Content per bp:1.757
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.16%
Number of Background Sequences with motif10.2
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets59.0 +/- 17.0bp
Average Position of motif in Background52.6 +/- 25.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORA/MA0071.1/Jaspar

Match Rank:1
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:CCGACATAGA-
-TGACCTTGAT
 T A G C A G T C A C T G C G T A A G T C G T C A A G C T C G T A C T A G G T C A A C G T
A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:2
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:CCGACATAGA-
-TGACCTARTT
 T A G C A G T C A C T G C G T A A G T C G T C A A G C T C G T A C T A G G T C A A C G T
A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:3
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CCGACATAGA----
TTGACCTANTTATN
 T A G C A G T C A C T G C G T A A G T C G T C A A G C T C G T A C T A G G T C A A C G T A C G T A C G T A C G T
A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

Esrra/MA0592.2/Jaspar

Match Rank:4
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CCGACATAGA-
ATGACCTTGAA
 T A G C A G T C A C T G C G T A A G T C G T C A A G C T C G T A C T A G G T C A A C G T
C G T A A G C T T A C G T G C A T G A C T G A C A G C T A G C T A T C G C T G A T G C A

ESRRB/MA0141.3/Jaspar

Match Rank:5
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CCGACATAGA
NATGACCTTGA
 A C G T T A G C A G T C A C T G C G T A A G T C G T C A A G C T C G T A C T A G G T C A
C G A T C G T A G A C T C T A G T C G A T A G C A G T C A G C T C G A T A T C G C T G A

PB0014.1_Esrra_1/Jaspar

Match Rank:6
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----CCGACATAGA---
NNNNATGACCTTGANTN
 A C G T A C G T A C G T A C G T T A G C A G T C A C T G C G T A A G T C G T C A A G C T C G T A C T A G G T C A A C G T A C G T A C G T
C A G T G T A C T C A G A G T C C G T A A G C T T C A G G C T A G A T C G T A C A G C T G A C T A T C G T C G A G T C A C A G T G T C A

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CCGACATAGA
NTGACCTTGA
 T A G C A G T C A C T G C G T A A G T C G T C A A G C T C G T A C T A G G T C A
C A T G A G C T T A C G G T C A G T A C T A G C A G C T G A C T A T C G T C G A

Esrrg/MA0643.1/Jaspar

Match Rank:8
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CCGACATAGA
ATGACCTTGA
 T A G C A G T C A C T G C G T A A G T C G T C A A G C T C G T A C T A G G T C A
C G T A G A C T T C A G G T C A T A G C G T A C A G C T G A C T A T C G C T G A

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:9
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CCGACATAGA
-TGACCT---
 T A G C A G T C A C T G C G T A A G T C G T C A A G C T C G T A C T A G G T C A
A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:10
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CCGACATAGA-
-TGACCTTGAV
 T A G C A G T C A C T G C G T A A G T C G T C A A G C T C G T A C T A G G T C A A C G T
A C G T G C A T C T A G C T G A G A T C G T A C G A C T G A C T A T C G C T G A T G C A