Information for 13-GTCAAAGACT (Motif 36)

A C T G A C G T A G T C C G T A C G T A C G T A A C T G C G T A A G T C A C G T
Reverse Opposite:
C G T A A C T G A C G T A G T C A C G T C G A T A C G T A C T G C G T A A G T C
p-value:1e-6
log p-value:-1.416e+01
Information Content per bp:1.957
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.51%
Number of Background Sequences with motif4.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets50.2 +/- 24.6bp
Average Position of motif in Background35.3 +/- 18.7bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hnf4a/MA0114.3/Jaspar

Match Rank:1
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---GTCAAAGACT---
GGGGTCAAAGTCCAAT
 A C G T A C G T A C G T A C T G A C G T A G T C C G T A C G T A C G T A A C T G C G T A A G T C A C G T A C G T A C G T A C G T
T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GTCAAAGACT
AGGTGHCAGACA
 A C G T A C G T A C T G A C G T A G T C C G T A C G T A C G T A A C T G C G T A A G T C A C G T
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GTCAAAGACT
ACATCAAAGG--
 A C G T A C G T A C T G A C G T A G T C C G T A C G T A C G T A A C T G C G T A A G T C A C G T
C T G A A T G C G C T A C G A T A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:4
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--GTCAAAGACT
NTGTCAN-----
 A C G T A C G T A C T G A C G T A G T C C G T A C G T A C G T A A C T G C G T A A G T C A C G T
G A T C G A C T C T A G A C G T A T G C C G T A C G T A A C G T A C G T A C G T A C G T A C G T

TCF7L2/MA0523.1/Jaspar

Match Rank:5
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----GTCAAAGACT
AAAGATCAAAGGAA
 A C G T A C G T A C G T A C G T A C T G A C G T A G T C C G T A C G T A C G T A A C T G C G T A A G T C A C G T
C T G A T C G A C T G A A T C G G C T A C G A T T A G C C G T A T C G A C T G A T C A G T C A G T C G A G T C A

Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer

Match Rank:6
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GTCAAAGACT
ACATCAAAGGNA
 A C G T A C G T A C T G A C G T A G T C C G T A C G T A C G T A A C T G C G T A A G T C A C G T
C T G A A T G C G C T A G C A T A T G C C G T A T C G A C T G A C T A G T C A G T A C G G T C A

MEIS3/MA0775.1/Jaspar

Match Rank:7
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---GTCAAAGACT
CCTGTCAA-----
 A C G T A C G T A C G T A C T G A C G T A G T C C G T A C G T A C G T A A C T G C G T A A G T C A C G T
T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A A C G T A C G T A C G T A C G T A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:8
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GTCAAAGACT
AGGTCAAGGTCA
 A C G T A C G T A C T G A C G T A G T C C G T A C G T A C G T A A C T G C G T A A G T C A C G T
T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:9
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GTCAAAGACT-
AGGTGNCAGACAG
 A C G T A C G T A C T G A C G T A G T C C G T A C G T A C G T A A C T G C G T A A G T C A C G T A C G T
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:10
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GTCAAAGACT--
AGGTCANTGACCTN
 A C G T A C G T A C T G A C G T A G T C C G T A C G T A C G T A A C T G C G T A A G T C A C G T A C G T A C G T
T C G A C A T G C A T G A C G T A T G C T C G A C T G A A G C T T A C G T G C A G T A C G A T C A G C T A G T C