Information for 9-CWTSATTTGTGGCTGC (Motif 13)

A T G C G C T A A G C T A T G C G T C A A C G T A C G T A C G T A T C G A G C T A C T G C T A G A T G C A C G T A C T G A T G C
Reverse Opposite:
A T C G G T A C C G T A A T C G G A T C A G T C C T G A A T G C G T C A G T C A T G C A C A G T A T C G T C G A C G A T T A C G
p-value:1e-11
log p-value:-2.540e+01
Information Content per bp:1.693
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.64%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets44.0 +/- 28.1bp
Average Position of motif in Background62.2 +/- 2.8bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.61
Offset:8
Orientation:forward strand
Alignment:CWTSATTTGTGGCTGC
--------CTGTCTGG
 A T G C G C T A A G C T A T G C G T C A A C G T A C G T A C G T A T C G A G C T A C T G C T A G A T G C A C G T A C T G A T G C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:2
Score:0.60
Offset:8
Orientation:forward strand
Alignment:CWTSATTTGTGGCTGC
--------TWGTCTGV
 A T G C G C T A A G C T A T G C G T C A A C G T A C G T A C G T A T C G A G C T A C T G C T A G A T G C A C G T A C T G A T G C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:3
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CWTSATTTGTGGCTGC
-GTCATGCHTGRCTGS
 A T G C G C T A A G C T A T G C G T C A A C G T A C G T A C G T A T C G A G C T A C T G C T A G A T G C A C G T A C T G A T G C
A C G T A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:4
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CWTSATTTGTGGCTGC
--TGATTTATGGCC--
 A T G C G C T A A G C T A T G C G T C A A C G T A C G T A C G T A T C G A G C T A C T G C T A G A T G C A C G T A C T G A T G C
A C G T A C G T C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C A C G T A C G T

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:5
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:CWTSATTTGTGGCTGC
-----NNTGTGGTTT-
 A T G C G C T A A G C T A T G C G T C A A C G T A C G T A C G T A T C G A G C T A C T G C T A G A T G C A C G T A C T G A T G C
A C G T A C G T A C G T A C G T A C G T A C G T G A C T C A G T A C T G G A C T A C T G A C T G A G C T A G C T C G A T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.58
Offset:6
Orientation:forward strand
Alignment:CWTSATTTGTGGCTGC
------VBSYGTCTGG
 A T G C G C T A A G C T A T G C G T C A A C G T A C G T A C G T A T C G A G C T A C T G C T A G A T G C A C G T A C T G A T G C
A C G T A C G T A C G T A C G T A C G T A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G

Hoxa9/MA0594.1/Jaspar

Match Rank:7
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:CWTSATTTGTGGCTGC
--TGATTTATGGC---
 A T G C G C T A A G C T A T G C G T C A A C G T A C G T A C G T A T C G A G C T A C T G C T A G A T G C A C G T A C T G A T G C
A C G T A C G T C G A T C T A G G C T A A C G T C G A T A C G T C G T A A G C T C A T G C T A G A T G C A C G T A C G T A C G T

RUNX1/MA0002.2/Jaspar

Match Rank:8
Score:0.57
Offset:4
Orientation:forward strand
Alignment:CWTSATTTGTGGCTGC
----GTCTGTGGTTT-
 A T G C G C T A A G C T A T G C G T C A A C G T A C G T A C G T A T C G A G C T A C T G C T A G A T G C A C G T A C T G A T G C
A C G T A C G T A C G T A C G T A C T G A G C T A G T C C G A T A T C G G A C T A C T G A C T G A G C T G A C T C G A T A C G T

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:9
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:CWTSATTTGTGGCTGC
--TGATTTATGGCC--
 A T G C G C T A A G C T A T G C G T C A A C G T A C G T A C G T A T C G A G C T A C T G C T A G A T G C A C G T A C T G A T G C
A C G T A C G T C G A T C T A G G C T A C G A T C A G T A C G T G T C A A G C T C A T G T C A G A G T C A G T C A C G T A C G T

Hoxc9/MA0485.1/Jaspar

Match Rank:10
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CWTSATTTGTGGCTGC
-NTGATTTATGGCC--
 A T G C G C T A A G C T A T G C G T C A A C G T A C G T A C G T A T C G A G C T A C T G C T A G A T G C A C G T A C T G A T G C
A C G T T C A G C G A T C T A G C G T A A C G T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C A C G T A C G T