Information for 13-TGACAATCATGGA (Motif 12)

A C G T A C T G C G T A A G T C C G T A C G T A A C G T T A G C C G T A A C G T C T A G A C T G C G T A
Reverse Opposite:
A C G T A G T C A G T C G T C A A C G T A C T G C G T A C G A T A C G T A C T G C G A T A G T C C G T A
p-value:1e-11
log p-value:-2.540e+01
Information Content per bp:1.877
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.64%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets36.0 +/- 18.8bp
Average Position of motif in Background59.0 +/- 19.9bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:1
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--TGACAATCATGGA
SCTGTCAVTCAV---
 A C G T A C G T A C G T A C T G C G T A A G T C C G T A C G T A A C G T T A G C C G T A A C G T C T A G A C T G C G T A
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T A C G T A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--TGACAATCATGGA
NCTGTCAATCAN---
 A C G T A C G T A C G T A C T G C G T A A G T C C G T A C G T A A C G T T A G C C G T A A C G T C T A G A C T G C G T A
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A A C G T A C G T A C G T

PB0172.1_Sox1_2/Jaspar

Match Rank:3
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---TGACAATCATGGA
NNNTAACAATTATAN-
 A C G T A C G T A C G T A C G T A C T G C G T A A G T C C G T A C G T A A C G T T A G C C G T A A C G T C T A G A C T G C G T A
A T G C T C A G G T A C A C G T T G C A T G C A A T G C C T G A C T G A G A C T C G A T C T G A G A C T C T G A C A T G A C G T

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:4
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--TGACAATCATGGA
RHTGWCAR-------
 A C G T A C G T A C G T A C T G C G T A A G T C C G T A C G T A A C G T T A G C C G T A A C G T C T A G A C T G C G T A
C T A G G T A C A G C T C T A G G C T A G A T C C G T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox17/MA0078.1/Jaspar

Match Rank:5
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:TGACAATCATGGA
-GACAATGNN---
 A C G T A C T G C G T A A G T C C G T A C G T A A C G T T A G C C G T A A C G T C T A G A C T G C G T A
A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G A C G T A C G T A C G T

Dux/MA0611.1/Jaspar

Match Rank:6
Score:0.63
Offset:2
Orientation:forward strand
Alignment:TGACAATCATGGA
--CCAATCAA---
 A C G T A C T G C G T A A G T C C G T A C G T A A C G T T A G C C G T A A C G T C T A G A C T G C G T A
A C G T A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A A C G T A C G T A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:7
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-TGACAATCATGGA
TTGACAG-------
 A C G T A C G T A C T G C G T A A G T C C G T A C G T A A C G T T A G C C G T A A C G T C T A G A C T G C G T A
G C A T G C A T A T C G T G C A A G T C C T G A C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:8
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---TGACAATCATGGA
ARNTGACA--------
 A C G T A C G T A C G T A C G T A C T G C G T A A G T C C G T A C G T A A C G T T A G C C G T A A C G T C T A G A C T G C G T A
T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:9
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---TGACAATCATGGA
GSCTGTCACTCA----
 A C G T A C G T A C G T A C G T A C T G C G T A A G T C C G T A C G T A A C G T T A G C C G T A A C G T C T A G A C T G C G T A
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A A C G T A C G T A C G T A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:10
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---TGACAATCATGGA
VGCTGWCAVB------
 A C G T A C G T A C G T A C G T A C T G C G T A A G T C C G T A C G T A A C G T T A G C C G T A A C G T C T A G A C T G C G T A
T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C A C G T A C G T A C G T A C G T A C G T A C G T