Information for 13-GAGCTTAGTG (Motif 50)

A T C G C G T A A T C G A G T C A C G T A C G T C G T A A C T G A C G T A C T G
Reverse Opposite:
A G T C C G T A A G T C A C G T C G T A C G T A A C T G A T G C A C G T A T G C
p-value:1e-5
log p-value:-1.220e+01
Information Content per bp:1.934
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.91%
Number of Background Sequences with motif29.4
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets51.8 +/- 15.4bp
Average Position of motif in Background50.8 +/- 22.0bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:1
Score:0.60
Offset:3
Orientation:forward strand
Alignment:GAGCTTAGTG---
---TTRAGTGSYK
 A T C G C G T A A T C G A G T C A C G T A C G T C G T A A C T G A C G T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T

NKX3-2/MA0122.2/Jaspar

Match Rank:2
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:GAGCTTAGTG--
---TTAAGTGGN
 A T C G C G T A A T C G A G T C A C G T A C G T C G T A A C T G A C G T A C T G A C G T A C G T
A C G T A C G T A C G T G A C T C G A T C T G A T C G A C A T G C G A T C T A G A T C G A G C T

Nkx3-1/MA0124.2/Jaspar

Match Rank:3
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:GAGCTTAGTG--
---TTAAGTGGT
 A T C G C G T A A T C G A G T C A C G T A C G T C G T A A C T G A C G T A C T G A C G T A C G T
A C G T A C G T A C G T G A C T C G A T C T G A C T G A A C T G C G A T T C A G A T C G A G C T

ISL2/MA0914.1/Jaspar

Match Rank:4
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:GAGCTTAGTG-
---TTAAGTGC
 A T C G C G T A A T C G A G T C A C G T A C G T C G T A A C T G A C G T A C T G A C G T
A C G T A C G T A C G T G A C T C G A T C T G A G C T A C A T G C G A T C T A G A T G C

Nr2e3/MA0164.1/Jaspar

Match Rank:5
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GAGCTTAGTG
CAAGCTT----
 A C G T A T C G C G T A A T C G A G T C A C G T A C G T C G T A A C T G A C G T A C T G
G A T C C G T A C G T A A T C G A G T C A C G T A C G T A C G T A C G T A C G T A C G T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:6
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:GAGCTTAGTG---
---TTAAGTGCTT
 A T C G C G T A A T C G A G T C A C G T A C G T C G T A A C T G A C G T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T

ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:GAGCTTAGTG----
--RGTTAGTGCCCY
 A T C G C G T A A T C G A G T C A C G T A C G T C G T A A C T G A C G T A C T G A C G T A C G T A C G T A C G T
A C G T A C G T C T G A C T A G A C G T G A C T G T C A A C T G A G C T A C T G A T G C G T A C G T A C A G C T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:8
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:GAGCTTAGTG---
--CTTGAGTGGCT
 A T C G C G T A A T C G A G T C A C G T A C G T C G T A A C T G A C G T A C T G A C G T A C G T A C G T
A C G T A C G T A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:9
Score:0.56
Offset:2
Orientation:forward strand
Alignment:GAGCTTAGTG--
--CCWTTGTYYB
 A T C G C G T A A T C G A G T C A C G T A C G T C G T A A C T G A C G T A C T G A C G T A C G T
A C G T A C G T A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--GAGCTTAGTG
CTGACCTTTG--
 A C G T A C G T A T C G C G T A A T C G A G T C A C G T A C G T C G T A A C T G A C G T A C T G
A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G A C G T A C G T