Information for 9-AGCCACCCTTGGCCTT (Motif 21)

C G T A C T A G A G T C A G T C C G T A G T A C A G T C G T A C A C G T A C G T T A C G T C A G T A G C A T G C A G C T A C G T
Reverse Opposite:
T C G A C T G A T A C G A C T G A G T C A T G C T C G A C G T A C A T G A C T G A C T G A C G T A C T G C T A G G A T C C G A T
p-value:1e-9
log p-value:-2.245e+01
Information Content per bp:1.720
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.91%
Number of Background Sequences with motif5.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets52.8 +/- 26.4bp
Average Position of motif in Background45.8 +/- 21.2bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0029.1_Hic1_1/Jaspar

Match Rank:1
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----AGCCACCCTTGGCCTT
ACTATGCCAACCTACC----
 A C G T A C G T A C G T A C G T C G T A C T A G A G T C A G T C C G T A G T A C A G T C G T A C A C G T A C G T T A C G T C A G T A G C A T G C A G C T A C G T
C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C A C G T A C G T A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:2
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-AGCCACCCTTGGCCTT
ATGCCAACC--------
 A C G T C G T A C T A G A G T C A G T C C G T A G T A C A G T C G T A C A C G T A C G T T A C G T C A G T A G C A T G C A G C T A C G T
T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:3
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--AGCCACCCTTGGCCTT
SCAGYCADGCATGAC---
 A C G T A C G T C G T A C T A G A G T C A G T C C G T A G T A C A G T C G T A C A C G T A C G T T A C G T C A G T A G C A T G C A G C T A C G T
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--AGCCACCCTTGGCCTT
CGTGCCAAG---------
 A C G T A C G T C G T A C T A G A G T C A G T C C G T A G T A C A G T C G T A C A C G T A C G T T A C G T C A G T A G C A T G C A G C T A C G T
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:5
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:AGCCACCCTTGGCCTT
TGCCAA----------
 C G T A C T A G A G T C A G T C C G T A G T A C A G T C G T A C A C G T A C G T T A C G T C A G T A G C A T G C A G C T A C G T
G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--AGCCACCCTTGGCCTT
GCAGCCAAGCGTGACN--
 A C G T A C G T C G T A C T A G A G T C A G T C C G T A G T A C A G T C G T A C A C G T A C G T T A C G T C A G T A G C A T G C A G C T A C G T
A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C A C G T A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:7
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:AGCCACCCTTGGCCTT
---TGACCTTGACCT-
 C G T A C T A G A G T C A G T C C G T A G T A C A G T C G T A C A C G T A C G T T A C G T C A G T A G C A T G C A G C T A C G T
A C G T A C G T A C G T G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T A C G T

PB0167.1_Sox13_2/Jaspar

Match Rank:8
Score:0.51
Offset:-4
Orientation:reverse strand
Alignment:----AGCCACCCTTGGCCTT
ANNTNCCCACCCANNAC---
 A C G T A C G T A C G T A C G T C G T A C T A G A G T C A G T C C G T A G T A C A G T C G T A C A C G T A C G T T A C G T C A G T A G C A T G C A G C T A C G T
G T C A C G T A C G A T C G A T C G T A G T A C G T A C T A G C C G T A G A T C G T A C G T A C C T G A C T G A G A C T G C T A G A T C A C G T A C G T A C G T

Nr2f6/MA0677.1/Jaspar

Match Rank:9
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:AGCCACCCTTGGCCTT
--TGACCTTTGACCTN
 C G T A C T A G A G T C A G T C C G T A G T A C A G T C G T A C A C G T A C G T T A C G T C A G T A G C A T G C A G C T A C G T
A C G T A C G T A G C T T C A G T G C A G T A C G T A C A G C T G A C T G A C T T C A G T G C A G T A C G T A C A G C T A G T C

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:10
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:AGCCACCCTTGGCCTT
---TGACCTTGACCT-
 C G T A C T A G A G T C A G T C C G T A G T A C A G T C G T A C A C G T A C G T T A C G T C A G T A G C A T G C A G C T A C G T
A C G T A C G T A C G T G A C T T C A G T G C A A G T C A G T C G A C T A C G T T A C G C G T A G T A C G A T C G A C T A C G T