Information for 3-TGTMAGAGSCTTTAGC (Motif 3)

C G A T C T A G C A G T G T A C C G T A A T C G C G T A A T C G T A G C T G A C C G A T A C G T A G C T C G T A A C T G A T G C
Reverse Opposite:
A T C G A G T C G A C T C T G A C G T A C G T A A C T G A T C G T A G C G A C T A T G C C G A T C A T G G C T A A G T C G C T A
p-value:1e-13
log p-value:-3.209e+01
Information Content per bp:1.690
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.50%
Number of Background Sequences with motif18.5
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets51.3 +/- 28.5bp
Average Position of motif in Background46.9 +/- 24.5bp
Strand Bias (log2 ratio + to - strand density)3.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BARHL2/MA0635.1/Jaspar

Match Rank:1
Score:0.56
Offset:6
Orientation:reverse strand
Alignment:TGTMAGAGSCTTTAGC
------ANCGTTTANN
 C G A T C T A G C A G T G T A C C G T A A T C G C G T A A T C G T A G C T G A C C G A T A C G T A G C T C G T A A C T G A T G C
A C G T A C G T A C G T A C G T A C G T A C G T C T G A A G T C G A T C C T A G G C A T A C G T C G A T C G T A C T A G A T G C

Barhl1/MA0877.1/Jaspar

Match Rank:2
Score:0.55
Offset:6
Orientation:reverse strand
Alignment:TGTMAGAGSCTTTAGC
------NNCAATTANN
 C G A T C T A G C A G T G T A C C G T A A T C G C G T A A T C G T A G C T G A C C G A T A C G T A G C T C G T A A C T G A T G C
A C G T A C G T A C G T A C G T A C G T A C G T T C G A T A C G G A T C T C G A G C T A G A C T G C A T C G T A C T A G T A G C

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:3
Score:0.51
Offset:7
Orientation:reverse strand
Alignment:TGTMAGAGSCTTTAGC
-------BCMATTAG-
 C G A T C T A G C A G T G T A C C G T A A T C G C G T A A T C G T A G C T G A C C G A T A C G T A G C T C G T A A C T G A T G C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G A C G T

VENTX/MA0724.1/Jaspar

Match Rank:4
Score:0.49
Offset:6
Orientation:forward strand
Alignment:TGTMAGAGSCTTTAGC
------ACCGATTAG-
 C G A T C T A G C A G T G T A C C G T A A T C G C G T A A T C G T A G C T G A C C G A T A C G T A G C T C G T A A C T G A T G C
A C G T A C G T A C G T A C G T A C G T A C G T C G T A T G A C G A T C T C A G G T C A A C G T A C G T C G T A C T A G A C G T

PB0135.1_Hoxa3_2/Jaspar

Match Rank:5
Score:0.49
Offset:3
Orientation:forward strand
Alignment:TGTMAGAGSCTTTAGC-
---AAAAACCATTAAGG
 C G A T C T A G C A G T G T A C C G T A A T C G C G T A A T C G T A G C T G A C C G A T A C G T A G C T C G T A A C T G A T G C A C G T
A C G T A C G T A C G T T C G A G T C A C T G A G C T A C G T A T G A C A G T C T G C A C G A T G C A T C G T A C T G A A T C G T C A G

PH0107.1_Msx2/Jaspar

Match Rank:6
Score:0.49
Offset:2
Orientation:forward strand
Alignment:TGTMAGAGSCTTTAGC---
--GAAGACCAATTAGCGCT
 C G A T C T A G C A G T G T A C C G T A A T C G C G T A A T C G T A G C T G A C C G A T A C G T A G C T C G T A A C T G A T G C A C G T A C G T A C G T
A C G T A C G T T C A G T G C A C T G A T A C G C T G A A T G C G A T C C G T A G T C A C G A T G A C T C T G A C A T G G A T C C A T G G A T C A G C T

Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer

Match Rank:7
Score:0.48
Offset:5
Orientation:forward strand
Alignment:TGTMAGAGSCTTTAGC
-----AAACMATTAN-
 C G A T C T A G C A G T G T A C C G T A A T C G C G T A A T C G T A G C T G A C C G A T A C G T A G C T C G T A A C T G A T G C
A C G T A C G T A C G T A C G T A C G T T C G A C T G A C T G A A T G C G T A C G T C A A G C T A G C T C G T A T C A G A C G T

Crx/MA0467.1/Jaspar

Match Rank:8
Score:0.48
Offset:3
Orientation:forward strand
Alignment:TGTMAGAGSCTTTAGC
---AAGAGGATTAG--
 C G A T C T A G C A G T G T A C C G T A A T C G C G T A A T C G T A G C T G A C C G A T A C G T A G C T C G T A A C T G A T G C
A C G T A C G T A C G T T C G A C T G A C T A G T C G A C T A G A C T G G T C A A C G T A G C T C G T A C T A G A C G T A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.47
Offset:6
Orientation:forward strand
Alignment:TGTMAGAGSCTTTAGC
------GGCCATTAAC
 C G A T C T A G C A G T G T A C C G T A A T C G C G T A A T C G T A G C T G A C C G A T A C G T A G C T C G T A A C T G A T G C
A C G T A C G T A C G T A C G T A C G T A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:10
Score:0.46
Offset:-2
Orientation:reverse strand
Alignment:--TGTMAGAGSCTTTAGC
VBTGWCAGCB--------
 A C G T A C G T C G A T C T A G C A G T G T A C C G T A A T C G C G T A A T C G T A G C T G A C C G A T A C G T A G C T C G T A A C T G A T G C
T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T