Information for 1-GGCCACCAGRGGGCGC (Motif 1)

A C T G C T A G A T G C A G T C C T G A A T G C A T G C C G T A A C T G T C A G A C T G A C T G A T C G G T A C C T A G A T G C
Reverse Opposite:
T A C G A G T C A C T G A T G C G T A C G T A C A G T C A G T C A C G T T A C G A T C G A G C T A C T G T A C G G A T C G T A C
p-value:1e-105
log p-value:-2.426e+02
Information Content per bp:1.713
Number of Target Sequences with motif123.0
Percentage of Target Sequences with motif14.37%
Number of Background Sequences with motif414.8
Percentage of Background Sequences with motif0.86%
Average Position of motif in Targets50.4 +/- 24.1bp
Average Position of motif in Background50.2 +/- 28.0bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.96
Offset:1
Orientation:reverse strand
Alignment:GGCCACCAGRGGGCGC-----
-GCCASCAGGGGGCGCYVNNG
 A C T G C T A G A T G C A G T C C T G A A T G C A T G C C G T A A C T G T C A G A C T G A C T G A T C G G T A C C T A G A T G C A C G T A C G T A C G T A C G T A C G T
A C G T C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.94
Offset:-1
Orientation:forward strand
Alignment:-GGCCACCAGRGGGCGC--
TGGCCACCAGGGGGCGCTA
 A C G T A C T G C T A G A T G C A G T C C T G A A T G C A T G C C G T A A C T G T C A G A C T G A C T G A T C G G T A C C T A G A T G C A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.91
Offset:-1
Orientation:reverse strand
Alignment:-GGCCACCAGRGGGCGC---
TGGCCACCAGGTGGCACTNT
 A C G T A C T G C T A G A T G C A G T C C T G A A T G C A T G C C G T A A C T G T C A G A C T G A C T G A T C G G T A C C T A G A T G C A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

PB0076.1_Sp4_1/Jaspar

Match Rank:4
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:GGCCACCAGRGGGCGC----
---NNNAAGGGGGCGGGNNN
 A C T G C T A G A T G C A G T C C T G A A T G C A T G C C G T A A C T G T C A G A C T G A C T G A T C G G T A C C T A G A T G C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T A C G T C G A A T C G C T G A C T G A C T A G C A T G C T A G A T C G A C T G G A T C A C T G A C T G C A T G C T G A G A T C T G A C

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:5
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:GGCCACCAGRGGGCGC
----AACAGATGGC--
 A C T G C T A G A T G C A G T C C T G A A T G C A T G C C G T A A C T G T C A G A C T G A C T G A T C G G T A C C T A G A T G C
A C G T A C G T A C G T A C G T C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:6
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GGCCACCAGRGGGCGC
DCHCAGCAGGRGGCC-
 A C T G C T A G A T G C A G T C C T G A A T G C A T G C C G T A A C T G T C A G A C T G A C T G A T C G G T A C C T A G A T G C
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GGCCACCAGRGGGCGC
-CACAGCAGGGGG---
 A C T G C T A G A T G C A G T C C T G A A T G C A T G C C G T A A C T G T C A G A C T G A C T G A T C G G T A C C T A G A T G C
A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T A C G T

PB0010.1_Egr1_1/Jaspar

Match Rank:8
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:GGCCACCAGRGGGCGC-
---ANTGCGGGGGCGGN
 A C T G C T A G A T G C A G T C C T G A A T G C A T G C C G T A A C T G T C A G A C T G A C T G A T C G G T A C C T A G A T G C A C G T
A C G T A C G T A C G T G T C A C T G A G C A T T C A G T G A C C A T G A C T G C T A G A T C G A C T G A G T C C T A G C A T G C T G A

INSM1/MA0155.1/Jaspar

Match Rank:9
Score:0.58
Offset:3
Orientation:forward strand
Alignment:GGCCACCAGRGGGCGC
---TGTCAGGGGGCG-
 A C T G C T A G A T G C A G T C C T G A A T G C A T G C C G T A A C T G T C A G A C T G A C T G A T C G G T A C C T A G A T G C
A C G T A C G T A C G T C A G T A C T G A G C T G T A C C G T A A C T G A T C G A C T G A C T G A C T G G A T C C T A G A C G T

ZIC4/MA0751.1/Jaspar

Match Rank:10
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GGCCACCAGRGGGCGC
NCNCAGCGGGGGGTC-
 A C T G C T A G A T G C A G T C C T G A A T G C A T G C C G T A A C T G T C A G A C T G A C T G A T C G G T A C C T A G A T G C
C A T G T G A C C T G A G A T C G T C A T C A G G A T C C T A G C A T G C A T G C A T G C A T G C A T G A G C T T G A C A C G T