Information for 8-TTTTWCTGCCAGA (Motif 9)

A C G T C G A T A C G T C G A T G C A T A G T C C G A T A C T G A G T C A G T C C G T A A C T G G C T A
Reverse Opposite:
C G A T G T A C C G A T A C T G T A C G G T A C C G T A T C A G C G T A C G T A C G T A C G T A C G T A
p-value:1e-11
log p-value:-2.556e+01
Information Content per bp:1.769
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.40%
Number of Background Sequences with motif37.2
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets69.3 +/- 15.9bp
Average Position of motif in Background51.5 +/- 27.6bp
Strand Bias (log2 ratio + to - strand density)2.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:1
Score:0.66
Offset:5
Orientation:reverse strand
Alignment:TTTTWCTGCCAGA--
-----ATGCCAGACN
 A C G T C G A T A C G T C G A T G C A T A G T C C G A T A C T G A G T C A G T C C G T A A C T G G C T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:2
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:TTTTWCTGCCAGA
TTTAATTGCN---
 A C G T C G A T A C G T C G A T G C A T A G T C C G A T A C T G A G T C A G T C C G T A A C T G G C T A
C G A T A G C T C G A T G C T A C G T A G A C T C A G T C T A G T A G C A T G C A C G T A C G T A C G T

E2F7/MA0758.1/Jaspar

Match Rank:3
Score:0.65
Offset:0
Orientation:forward strand
Alignment:TTTTWCTGCCAGA-
TTTTCCCGCCAAAA
 A C G T C G A T A C G T C G A T G C A T A G T C C G A T A C T G A G T C A G T C C G T A A C T G G C T A A C G T
C G A T C G A T A G C T A G C T A T G C A T G C A G T C T C A G A G T C A T G C C G T A C G T A G C T A C G T A

E2F8/MA0865.1/Jaspar

Match Rank:4
Score:0.61
Offset:1
Orientation:forward strand
Alignment:TTTTWCTGCCAGA
-TTTCCCGCCAAA
 A C G T C G A T A C G T C G A T G C A T A G T C C G A T A C T G A G T C A G T C C G T A A C T G G C T A
A C G T G A C T A G C T A C G T A G T C A G T C A T G C T A C G A G T C T A G C C T G A C G T A G C T A

Hoxd9/MA0913.1/Jaspar

Match Rank:5
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-TTTTWCTGCCAGA
TTTTTATTGC----
 A C G T A C G T C G A T A C G T C G A T G C A T A G T C C G A T A C T G A G T C A G T C C G T A A C T G G C T A
C G A T G C A T C A G T C G A T C G A T C G T A G A C T A C G T C T A G A G T C A C G T A C G T A C G T A C G T

HOXA10/MA0899.1/Jaspar

Match Rank:6
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-TTTTWCTGCCAGA
NTTTTATTACN---
 A C G T A C G T C G A T A C G T C G A T G C A T A G T C C G A T A C T G A G T C A G T C C G T A A C T G G C T A
C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C A C G T A C G T A C G T

PH0012.1_Cdx1/Jaspar

Match Rank:7
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---TTTTWCTGCCAGA
NAATTTTATTACCTNN
 A C G T A C G T A C G T A C G T C G A T A C G T C G A T G C A T A G T C C G A T A C T G A G T C A G T C C G T A A C T G G C T A
C G A T G T C A T C G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T G A C T G C T A

SA0002.1_at_AC_acceptor/Jaspar

Match Rank:8
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----TTTTWCTGCCAGA--
TTTTTTTTTTTTTTCAGGTT
 A C G T A C G T A C G T A C G T A C G T A C G T C G A T A C G T C G A T G C A T A G T C C G A T A C T G A G T C A G T C C G T A A C T G G C T A A C G T A C G T
G A C T A G C T A G C T G A C T G A C T A G C T A G C T A G C T A G C T G A C T G A C T G A C T G A C T G A C T G A T C C G T A A C T G T C A G G C A T C G A T

PH0013.1_Cdx2/Jaspar

Match Rank:9
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---TTTTWCTGCCAGA
NAATTTTATTACCNNN
 A C G T A C G T A C G T A C G T C G A T A C G T C G A T G C A T A G T C C G A T A C T G A G T C A G T C C G T A A C T G G C T A
C T G A G T C A C T G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T A G C T G C A T

PH0075.1_Hoxd10/Jaspar

Match Rank:10
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----TTTTWCTGCCAGA
NTNAATTTTATTGNATT-
 A C G T A C G T A C G T A C G T A C G T A C G T C G A T A C G T C G A T G C A T A G T C C G A T A C T G A G T C A G T C C G T A A C T G G C T A
C G T A G C A T G C T A G C T A C T G A A G C T C G A T C G A T C G A T C T G A G C A T C A G T C T A G A G T C T G C A G A C T A C G T A C G T