Information for 4-GCCATAAATM (Motif 3)

T A C G G A T C G T A C C G T A C G A T C G T A C T G A G C T A G C A T G T A C
Reverse Opposite:
C A T G C G T A C G A T G A C T G C A T G C T A C G A T C A T G C T A G A T G C
p-value:1e-25
log p-value:-5.774e+01
Information Content per bp:1.598
Number of Target Sequences with motif126.0
Percentage of Target Sequences with motif14.72%
Number of Background Sequences with motif2447.4
Percentage of Background Sequences with motif5.14%
Average Position of motif in Targets46.3 +/- 25.3bp
Average Position of motif in Background49.4 +/- 29.6bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX1/MA0878.1/Jaspar

Match Rank:1
Score:0.89
Offset:0
Orientation:forward strand
Alignment:GCCATAAATM
GCAATAAAA-
 T A C G G A T C G T A C C G T A C G A T C G T A C T G A G C T A G C A T G T A C
T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:2
Score:0.89
Offset:-1
Orientation:forward strand
Alignment:-GCCATAAATM-
NGYCATAAAWCH
 A C G T T A C G G A T C G T A C C G T A C G A T C G T A C T G A G C T A G C A T G T A C A C G T
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:3
Score:0.89
Offset:-1
Orientation:forward strand
Alignment:-GCCATAAATM-
GGCCATAAATCA
 A C G T T A C G G A T C G T A C C G T A C G A T C G T A C T G A G C T A G C A T G T A C A C G T
C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A

CDX2/MA0465.1/Jaspar

Match Rank:4
Score:0.89
Offset:-2
Orientation:forward strand
Alignment:--GCCATAAATM
AAGCCATAAAA-
 A C G T A C G T T A C G G A T C G T A C C G T A C G A T C G T A C T G A G C T A G C A T G T A C
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A A C G T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:5
Score:0.89
Offset:-1
Orientation:forward strand
Alignment:-GCCATAAATM-
GGCCATAAATCA
 A C G T T A C G G A T C G T A C C G T A C G A T C G T A C T G A G C T A G C A T G T A C A C G T
C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:6
Score:0.88
Offset:0
Orientation:forward strand
Alignment:GCCATAAATM
GTCATAAAAN
 T A C G G A T C G T A C C G T A C G A T C G T A C T G A G C T A G C A T G T A C
T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T

Hoxa9/MA0594.1/Jaspar

Match Rank:7
Score:0.88
Offset:0
Orientation:forward strand
Alignment:GCCATAAATM-
GCCATAAATCA
 T A C G G A T C G T A C C G T A C G A T C G T A C T G A G C T A G C A T G T A C A C G T
T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A

Hoxc9/MA0485.1/Jaspar

Match Rank:8
Score:0.88
Offset:-1
Orientation:forward strand
Alignment:-GCCATAAATM--
GGCCATAAATCAC
 A C G T T A C G G A T C G T A C C G T A C G A T C G T A C T G A G C T A G C A T G T A C A C G T A C G T
C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C

HOXA10/MA0899.1/Jaspar

Match Rank:9
Score:0.85
Offset:-1
Orientation:forward strand
Alignment:-GCCATAAATM
GGTAATAAAAA
 A C G T T A C G G A T C G T A C C G T A C G A T C G T A C T G A G C T A G C A T G T A C
C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A

PH0013.1_Cdx2/Jaspar

Match Rank:10
Score:0.83
Offset:-4
Orientation:forward strand
Alignment:----GCCATAAATM--
AAAGGTAATAAAATTT
 A C G T A C G T A C G T A C G T T A C G G A T C G T A C C G T A C G A T C G T A C T G A G C T A G C A T G T A C A C G T A C G T
C G T A T C G A T A C G C T A G T C A G A G C T G T C A C T G A C G A T C G T A C G T A G C T A G C T A G A C T C A G T G A C T