Information for 10-CCCTGCTGGAGTG (Motif 10)

A G T C A G T C A G T C A C G T A C T G A G T C A C G T A C T G A C T G C G T A A C T G C G A T A C T G
Reverse Opposite:
A G T C C G T A A G T C A C G T A G T C A G T C C G T A C T A G A G T C C G T A A C T G A C T G C T A G
p-value:1e-8
log p-value:-1.981e+01
Information Content per bp:1.940
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.63%
Number of Background Sequences with motif3.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets47.0 +/- 23.8bp
Average Position of motif in Background60.5 +/- 8.2bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--CCCTGCTGGAGTG
CCCCCTGCTGTG---
 A C G T A C G T A G T C A G T C A G T C A C G T A C T G A G T C A C G T A C T G A C T G C G T A A C T G C G A T A C T G
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:2
Score:0.64
Offset:5
Orientation:forward strand
Alignment:CCCTGCTGGAGTG--
-----BTBRAGTGSN
 A G T C A G T C A G T C A C G T A C T G A G T C A C G T A C T G A C T G C G T A A C T G C G A T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:3
Score:0.63
Offset:5
Orientation:reverse strand
Alignment:CCCTGCTGGAGTG--
-----CTYRAGTGSY
 A G T C A G T C A G T C A C G T A C T G A G T C A C G T A C T G A C T G C G T A A C T G C G A T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:4
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----CCCTGCTGGAGTG
GGCCYCCTGCTGDGH--
 A C G T A C G T A C G T A C G T A G T C A G T C A G T C A C G T A C T G A G T C A C G T A C T G A C T G C G T A A C T G C G A T A C T G
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:5
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:CCCTGCTGGAGTG---
-----CTTGAGTGGCT
 A G T C A G T C A G T C A C G T A C T G A G T C A C G T A C T G A C T G C G T A A C T G C G A T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:6
Score:0.60
Offset:6
Orientation:reverse strand
Alignment:CCCTGCTGGAGTG---
------TTGAGTGSTT
 A G T C A G T C A G T C A C G T A C T G A G T C A C G T A C T G A C T G C G T A A C T G C G A T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T

PB0205.1_Zic1_2/Jaspar

Match Rank:7
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CCCTGCTGGAGTG
TNTCCTGCTGTGNNG
 A C G T A C G T A G T C A G T C A G T C A C G T A C T G A G T C A C G T A C T G A C T G C G T A A C T G C G A T A C T G
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

PB0206.1_Zic2_2/Jaspar

Match Rank:8
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CCCTGCTGGAGTG
TCNCCTGCTGNGNNN
 A C G T A C G T A G T C A G T C A G T C A C G T A C T G A G T C A C G T A C T G A C T G C G T A A C T G C G A T A C T G
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:9
Score:0.57
Offset:6
Orientation:forward strand
Alignment:CCCTGCTGGAGTG---
------TTRAGTGSYK
 A G T C A G T C A G T C A C G T A C T G A G T C A C G T A C T G A C T G C G T A A C T G C G A T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T

TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer

Match Rank:10
Score:0.57
Offset:4
Orientation:forward strand
Alignment:CCCTGCTGGAGTG-
----CCWGGAATGY
 A G T C A G T C A G T C A C G T A C T G A G T C A C G T A C T G A C T G C G T A A C T G C G A T A C T G A C G T
A C G T A C G T A C G T A C G T A T G C G A T C C G A T C T A G A C T G G C T A C G T A A G C T A C T G A G C T