Information for 3-TTGAAAAGCATTG (Motif 4)

C G A T A C G T A T C G C G T A G T C A C G T A C G T A C T A G A G T C C G T A G A C T A C G T T A C G
Reverse Opposite:
A G T C C G T A C G T A A C G T A C T G A G T C A C G T A C G T A C G T A C G T A T G C C G T A C G T A
p-value:1e-11
log p-value:-2.729e+01
Information Content per bp:1.828
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.66%
Number of Background Sequences with motif13.9
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets38.1 +/- 22.4bp
Average Position of motif in Background45.3 +/- 26.5bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:1
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----TTGAAAAGCATTG
CGGTTTCAAA-------
 A C G T A C G T A C G T A C G T C G A T A C G T A T C G C G T A G T C A C G T A C G T A C T A G A G T C C G T A G A C T A C G T T A C G
T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0023.1_Gata6_1/Jaspar

Match Rank:2
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----TTGAAAAGCATTG
TATAGAGATAAGAATTG
 A C G T A C G T A C G T A C G T C G A T A C G T A T C G C G T A G T C A C G T A C G T A C T A G A G T C C G T A G A C T A C G T T A C G
C G A T G T C A C G A T T G C A C A G T G C T A A C T G C G T A A G C T C G T A C G T A A T C G T G C A C T G A C G A T G C A T T C A G

LIN54/MA0619.1/Jaspar

Match Rank:3
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--TTGAAAAGCATTG
NATTCAAAT------
 A C G T A C G T C G A T A C G T A T C G C G T A G T C A C G T A C G T A C T A G A G T C C G T A G A C T A C G T T A C G
C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T A C G T A C G T A C G T A C G T A C G T A C G T

PB0073.1_Sox7_1/Jaspar

Match Rank:4
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-TTGAAAAGCATTG--------
AATAAAGAACAATAGAATTTCA
 A C G T C G A T A C G T A T C G C G T A G T C A C G T A C G T A C T A G A G T C C G T A G A C T A C G T T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G T C A G C T A A C G T C T G A G C T A C G T A C T A G C T G A C G T A A G T C C G T A C T G A C G A T C G T A T C A G G C T A G C T A G A C T G C A T G C A T A G T C G C T A

Foxq1/MA0040.1/Jaspar

Match Rank:5
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:TTGAAAAGCATTG
--AATAAACAATN
 C G A T A C G T A T C G C G T A G T C A C G T A C G T A C T A G A G T C C G T A G A C T A C G T T A C G
A C G T A C G T G C T A T G C A A G C T C G T A C G T A C G T A A G T C C G T A C G T A A G C T C G T A

ONECUT3/MA0757.1/Jaspar

Match Rank:6
Score:0.56
Offset:1
Orientation:forward strand
Alignment:TTGAAAAGCATTG--
-AAAAAATCAATAAT
 C G A T A C G T A T C G C G T A G T C A C G T A C G T A C T A G A G T C C G T A G A C T A C G T T A C G A C G T A C G T
A C G T T C G A C T G A C G T A G C T A C T G A C T G A G A C T G T A C T C G A C G T A C G A T C G T A G C T A G C A T

PB0141.1_Isgf3g_2/Jaspar

Match Rank:7
Score:0.55
Offset:2
Orientation:forward strand
Alignment:TTGAAAAGCATTG---
--GCAAAACATTACTA
 C G A T A C G T A T C G C G T A G T C A C G T A C G T A C T A G A G T C C G T A G A C T A C G T T A C G A C G T A C G T A C G T
A C G T A C G T A C T G T A G C C G T A C G T A C G T A C T G A T A G C C G T A A C G T C A G T C G T A G T A C G A C T C T G A

Sox5/MA0087.1/Jaspar

Match Rank:8
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:TTGAAAAGCATTG
-----NAACAAT-
 C G A T A C G T A T C G C G T A G T C A C G T A C G T A C T A G A G T C C G T A G A C T A C G T T A C G
A C G T A C G T A C G T A C G T A C G T G C A T C G T A C T G A A G T C C G T A G T C A A C G T A C G T

PH0017.1_Cux1_2/Jaspar

Match Rank:9
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--TTGAAAAGCATTG
TAATGATGATCACTA
 A C G T A C G T C G A T A C G T A T C G C G T A G T C A C G T A C G T A C T A G A G T C C G T A G A C T A C G T T A C G
C G A T T G C A T C G A A G C T C A T G G C T A C G A T C T A G C G T A C A G T G A T C T C G A G T A C C G A T C G T A

NFATC2/MA0152.1/Jaspar

Match Rank:10
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:TTGAAAAGCATTG
TGGAAAA------
 C G A T A C G T A T C G C G T A G T C A C G T A C G T A C T A G A G T C C G T A G A C T A C G T T A C G
C G A T A C T G A C T G C G T A C G T A T C G A G C T A A C G T A C G T A C G T A C G T A C G T A C G T