Information for 2-GTTGTGTGCTGCT (Motif 6)

A C T G A C G T A G C T A C T G A C G T A C T G A C G T A C T G A G T C A G C T A C T G A T G C A G C T
Reverse Opposite:
C T G A A T C G A G T C C T G A A C T G A G T C C G T A A G T C C G T A A G T C C T G A C G T A A G T C
p-value:1e-11
log p-value:-2.640e+01
Information Content per bp:1.934
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.79%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets54.0 +/- 10.1bp
Average Position of motif in Background93.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0208.1_Zscan4_2/Jaspar

Match Rank:1
Score:0.80
Offset:-3
Orientation:reverse strand
Alignment:---GTTGTGTGCTGCT
NNNNTTGTGTGCTTNN
 A C G T A C G T A C G T A C T G A C G T A G C T A C T G A C G T A C T G A C G T A C T G A G T C A G C T A C T G A T G C A G C T
A G C T C G T A C G A T C A G T C A G T C G A T C T A G A G C T A C T G C G A T A C T G A G T C A G C T C G A T A T G C C A T G

PB0130.1_Gm397_2/Jaspar

Match Rank:2
Score:0.72
Offset:-3
Orientation:reverse strand
Alignment:---GTTGTGTGCTGCT
NNGCGTGTGTGCNGCN
 A C G T A C G T A C G T A C T G A C G T A G C T A C T G A C G T A C T G A C G T A C T G A G T C A G C T A C T G A T G C A G C T
C A G T A C G T C T A G T G A C C A T G A C G T T A C G A G C T C A T G A G C T A C T G A G T C A G T C C A T G A G T C G A C T

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:3
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GTTGTGTGCTGCT
CCATTGTATGCAAAT
 A C G T A C G T A C T G A C G T A G C T A C T G A C G T A C T G A C G T A C T G A G T C A G C T A C T G A T G C A G C T
A G T C G A T C G C T A C G A T A C G T T A C G G C A T C T G A G A C T A C T G A G T C G C T A C T G A T C G A C A G T

PB0168.1_Sox14_2/Jaspar

Match Rank:4
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----GTTGTGTGCTGCT
NNNCCATTGTGTNAN---
 A C G T A C G T A C G T A C G T A C G T A C T G A C G T A G C T A C T G A C G T A C T G A C G T A C T G A G T C A G C T A C T G A T G C A G C T
A T C G T G A C A C T G A G T C G A T C C G T A A C G T A C G T T A C G G C A T A T C G A G C T T C A G T G C A T C A G A C G T A C G T A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:5
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:GTTGTGTGCTGCT
-TTGCGTGCVA--
 A C T G A C G T A G C T A C T G A C G T A C T G A C G T A C T G A G T C A G C T A C T G A T G C A G C T
A C G T A C G T C A G T A C T G A G T C T C A G C G A T C A T G G T A C T A G C C G T A A C G T A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:6
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GTTGTGTGCTGCT
CTTGAGTGGCT--
 A C T G A C G T A G C T A C T G A C G T A C T G A C G T A C T G A G T C A G C T A C T G A T G C A G C T
A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T A C G T A C G T

PB0044.1_Mtf1_1/Jaspar

Match Rank:7
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GTTGTGTGCTGCT-
GGGCCGTGTGCAAAAA
 A C G T A C G T A C T G A C G T A G C T A C T G A C G T A C T G A C G T A C T G A G T C A G C T A C T G A T G C A G C T A C G T
C A T G A C T G C T A G G A T C G T A C C A T G C A G T A C T G G A C T C A T G G T A C C G T A T G C A G T C A C T G A G C A T

PB0120.1_Foxj1_2/Jaspar

Match Rank:8
Score:0.54
Offset:-5
Orientation:reverse strand
Alignment:-----GTTGTGTGCTGCT
GTNTTGTTGTGANNT---
 A C G T A C G T A C G T A C G T A C G T A C T G A C G T A G C T A C T G A C G T A C T G A C G T A C T G A G T C A G C T A C T G A T G C A G C T
C A T G A G C T T A C G G A C T G C A T A C T G A C G T G A C T C T A G A G C T A C T G T G C A A G T C T C G A C G A T A C G T A C G T A C G T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:9
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:GTTGTGTGCTGCT
-TTAAGTGCTT--
 A C T G A C G T A G C T A C T G A C G T A C T G A C G T A C T G A G T C A G C T A C T G A T G C A G C T
A C G T A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T A C G T A C G T

KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---GTTGTGTGCTGCT
GGGGGTGTGTCC----
 A C G T A C G T A C G T A C T G A C G T A G C T A C T G A C G T A C T G A C G T A C T G A G T C A G C T A C T G A T G C A G C T
T C A G C A T G C A T G A C T G A C T G A G C T A C T G A C G T A C T G C A G T A T G C A G T C A C G T A C G T A C G T A C G T