Information for 8-KCCTSCCCAGCAG (Motif 23)

C A G T T A G C T A G C A G C T A T G C T G A C T G A C T G A C C T G A A T C G T G A C C T G A C A T G
Reverse Opposite:
G T A C G A C T A C T G A T G C G A C T A C T G A C T G A C T G T A C G T C G A A T C G A T C G G T C A
p-value:1e-7
log p-value:-1.830e+01
Information Content per bp:1.564
Number of Target Sequences with motif74.0
Percentage of Target Sequences with motif11.71%
Number of Background Sequences with motif2745.4
Percentage of Background Sequences with motif5.79%
Average Position of motif in Targets48.4 +/- 26.6bp
Average Position of motif in Background49.6 +/- 32.5bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.70
Offset:5
Orientation:forward strand
Alignment:KCCTSCCCAGCAG----
-----CACAGCAGGGGG
 C A G T T A G C T A G C A G C T A T G C T G A C T G A C T G A C C T G A A T C G T G A C C T G A C A T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

PB0205.1_Zic1_2/Jaspar

Match Rank:2
Score:0.69
Offset:2
Orientation:forward strand
Alignment:KCCTSCCCAGCAG----
--CCACACAGCAGGAGA
 C A G T T A G C T A G C A G C T A T G C T G A C T G A C T G A C C T G A A T C G T G A C C T G A C A T G A C G T A C G T A C G T A C G T
A C G T A C G T A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0206.1_Zic2_2/Jaspar

Match Rank:3
Score:0.69
Offset:2
Orientation:forward strand
Alignment:KCCTSCCCAGCAG----
--CCACACAGCAGGAGA
 C A G T T A G C T A G C A G C T A T G C T G A C T G A C T G A C C T G A A T C G T G A C C T G A C A T G A C G T A C G T A C G T A C G T
A C G T A C G T G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:4
Score:0.68
Offset:4
Orientation:reverse strand
Alignment:KCCTSCCCAGCAG------
----DCHCAGCAGGRGGCC
 C A G T T A G C T A G C A G C T A T G C T G A C T G A C T G A C C T G A A T C G T G A C C T G A C A T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

PB0207.1_Zic3_2/Jaspar

Match Rank:5
Score:0.67
Offset:2
Orientation:forward strand
Alignment:KCCTSCCCAGCAG----
--GAGCACAGCAGGACA
 C A G T T A G C T A G C A G C T A T G C T G A C T G A C T G A C C T G A A T C G T G A C C T G A C A T G A C G T A C G T A C G T A C G T
A C G T A C G T C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:6
Score:0.66
Offset:4
Orientation:reverse strand
Alignment:KCCTSCCCAGCAG-
----DCTCAGCAGG
 C A G T T A G C T A G C A G C T A T G C T G A C T G A C T G A C C T G A A T C G T G A C C T G A C A T G A C G T
A C G T A C G T A C G T A C G T C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:7
Score:0.61
Offset:5
Orientation:forward strand
Alignment:KCCTSCCCAGCAG
-----ANCAGCTG
 C A G T T A G C T A G C A G C T A T G C T G A C T G A C T G A C C T G A A T C G T G A C C T G A C A T G
A C G T A C G T A C G T A C G T A C G T C T G A T C A G G T A C G C T A A C T G T G A C G C A T C A T G

POL010.1_DCE_S_III/Jaspar

Match Rank:8
Score:0.60
Offset:7
Orientation:forward strand
Alignment:KCCTSCCCAGCAG
-------CAGCC-
 C A G T T A G C T A G C A G C T A T G C T G A C T G A C T G A C C T G A A T C G T G A C C T G A C A T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.60
Offset:6
Orientation:forward strand
Alignment:KCCTSCCCAGCAG---
------NCAGCTGCTG
 C A G T T A G C T A G C A G C T A T G C T G A C T G A C T G A C C T G A A T C G T G A C C T G A C A T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A A G T C C G T A A T C G A T G C C G A T A C T G A G T C A G C T A C T G

POL009.1_DCE_S_II/Jaspar

Match Rank:10
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:KCCTSCCCAGCAG
-----CACAGN--
 C A G T T A G C T A G C A G C T A T G C T G A C T G A C T G A C C T G A A T C G T G A C C T G A C A T G
A C G T A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T