Information for 5-RCCAYRGAGCCTGGCA (Motif 8)

C T A G A T G C A G T C C T G A A G T C C T G A A C T G G T C A A C T G A G T C A G T C C G A T A C T G T A C G T A G C T G C A
Reverse Opposite:
A C G T A C T G A G T C A G T C C G T A A C T G A C T G A G T C A C G T A G T C A G C T C T A G A G C T A C T G A T C G A G T C
p-value:1e-11
log p-value:-2.640e+01
Information Content per bp:1.826
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.79%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets49.1 +/- 29.8bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.40
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:RCCAYRGAGCCTGGCA
-TCAGNGAGCGTGAC-
 C T A G A T G C A G T C C T G A A G T C C T G A A C T G G T C A A C T G A G T C A G T C C G A T A C T G T A C G T A G C T G C A
A C G T A C G T T A G C T C G A A T C G T A C G T C A G C T G A A T C G A G T C C T A G G A C T C T A G C T G A T G A C A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.56
Offset:9
Orientation:reverse strand
Alignment:RCCAYRGAGCCTGGCA-
---------CTTGGCAA
 C T A G A T G C A G T C C T G A A G T C C T G A A C T G G T C A A C T G A G T C A G T C C G A T A C T G T A C G T A G C T G C A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:3
Score:0.56
Offset:-6
Orientation:forward strand
Alignment:------RCCAYRGAGCCTGGCA
GAGCCTGGTACTGWGCCTGR--
 A C G T A C G T A C G T A C G T A C G T A C G T C T A G A T G C A G T C C T G A A G T C C T G A A C T G G T C A A C T G A G T C A G T C C G A T A C T G T A C G T A G C T G C A
T A C G C T G A C A T G G A T C G T A C G C A T T C A G T A C G A G C T G T C A G A T C G C A T T A C G C G T A C T A G G A T C G A T C C G A T A C T G T C A G A C G T A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:4
Score:0.55
Offset:8
Orientation:forward strand
Alignment:RCCAYRGAGCCTGGCA--
--------VGCTGWCAVB
 C T A G A T G C A G T C C T G A A G T C C T G A A C T G G T C A A C T G A G T C A G T C C G A T A C T G T A C G T A G C T G C A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C

ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-RCCAYRGAGCCTGGCA
GRTGMTRGAGCC-----
 A C G T C T A G A T G C A G T C C T G A A G T C C T G A A C T G G T C A A C T G A G T C A G T C C G A T A C T G T A C G T A G C T G C A
A T C G T C G A G A C T A T C G T G A C A C G T C T A G A C T G C G T A A C T G A G T C G T A C A C G T A C G T A C G T A C G T A C G T

PH0141.1_Pknox2/Jaspar

Match Rank:6
Score:0.53
Offset:4
Orientation:forward strand
Alignment:RCCAYRGAGCCTGGCA----
----AAGCACCTGTCAATAT
 C T A G A T G C A G T C C T G A A G T C C T G A A C T G G T C A A C T G A G T C A G T C C G A T A C T G T A C G T A G C T G C A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C T A C T G A T C A G A T G C T C G A T A G C G T A C A G C T A C T G G A C T A G T C C T G A G T C A G C A T G C T A A G C T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.52
Offset:7
Orientation:reverse strand
Alignment:RCCAYRGAGCCTGGCA---
-------TGTCTGDCACCT
 C T A G A T G C A G T C C T G A A G T C C T G A A C T G G T C A A C T G A G T C A G T C C G A T A C T G T A C G T A G C T G C A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

POL013.1_MED-1/Jaspar

Match Rank:8
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:RCCAYRGAGCCTGGCA
----CGGAGC------
 C T A G A T G C A G T C C T G A A G T C C T G A A C T G G T C A A C T G A G T C A G T C C G A T A C T G T A C G T A G C T G C A
A C G T A C G T A C G T A C G T A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:9
Score:0.52
Offset:9
Orientation:reverse strand
Alignment:RCCAYRGAGCCTGGCA-
---------GCTGTCAA
 C T A G A T G C A G T C C T G A A G T C C T G A A C T G G T C A A C T G A G T C A G T C C G A T A C T G T A C G T A G C T G C A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A

PB0060.1_Smad3_1/Jaspar

Match Rank:10
Score:0.51
Offset:4
Orientation:forward strand
Alignment:RCCAYRGAGCCTGGCA-----
----CAAATCCAGACATCACA
 C T A G A T G C A G T C C T G A A G T C C T G A A C T G G T C A A C T G A G T C A G T C C G A T A C T G T A C G T A G C T G C A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A