Information for 17-CCTCCTGCATGGA (Motif 34)

A T G C A G T C A C G T A T G C A G T C A C G T A C T G A T G C C G T A C G A T A C T G A C T G C G T A
Reverse Opposite:
C G A T A G T C G T A C C G T A A C G T A T C G A G T C C G T A A C T G A T C G C G T A A C T G A T C G
p-value:1e-6
log p-value:-1.409e+01
Information Content per bp:1.848
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.79%
Number of Background Sequences with motif12.8
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets48.8 +/- 30.7bp
Average Position of motif in Background47.7 +/- 26.8bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0205.1_Zic1_2/Jaspar

Match Rank:1
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---CCTCCTGCATGGA
TNTCCTGCTGTGNNG-
 A C G T A C G T A C G T A T G C A G T C A C G T A T G C A G T C A C G T A C T G A T G C C G T A C G A T A C T G A C T G C G T A
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:2
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CCTCCTGCATGGA
TCNCCTGCTGNGNNN-
 A C G T A C G T A C G T A T G C A G T C A C G T A T G C A G T C A C G T A C T G A T G C C G T A C G A T A C T G A C T G C G T A
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G A C G T

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:3
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CCTCCTGCATGGA
NNCACCTGNN----
 A C G T A T G C A G T C A C G T A T G C A G T C A C G T A C T G A T G C C G T A C G A T A C T G A C T G C G T A
A T G C T G C A A G T C C G T A A G T C A G T C A C G T A C T G A T G C G T C A A C G T A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:4
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CCTCCTGCATGGA
GGCCYCCTGCTGDGH
 A C G T A C G T A T G C A G T C A C G T A T G C A G T C A C G T A C T G A T G C C G T A C G A T A C T G A C T G C G T A
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CCTCCTGCATGGA
CCCCCTGCTGTG-
 A T G C A G T C A C G T A T G C A G T C A C G T A C T G A T G C C G T A C G A T A C T G A C T G C G T A
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T

TCF3/MA0522.2/Jaspar

Match Rank:6
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CCTCCTGCATGGA
AACACCTGCT----
 A C G T A T G C A G T C A C G T A T G C A G T C A C G T A C T G A T G C C G T A C G A T A C T G A C T G C G T A
G T C A T C G A A G T C G C T A A T G C A T G C G C A T T C A G A G T C C A G T A C G T A C G T A C G T A C G T

TCF4/MA0830.1/Jaspar

Match Rank:7
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CCTCCTGCATGGA
CGCACCTGCT----
 A C G T A T G C A G T C A C G T A T G C A G T C A C G T A C T G A T G C C G T A C G A T A C T G A C T G C G T A
G A T C T C A G G A T C C G T A A T G C T A G C C G A T C T A G A T G C C G A T A C G T A C G T A C G T A C G T

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:8
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CCTCCTGCATGGA
ACATCCTGNT----
 A C G T A T G C A G T C A C G T A T G C A G T C A C G T A C T G A T G C C G T A C G A T A C T G A C T G C G T A
C T G A A T G C C G T A A C G T A G T C A G T C A C G T A C T G A T C G G C A T A C G T A C G T A C G T A C G T

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:9
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CCTCCTGCATGGA
SNGCACCTGCHS---
 A C G T A C G T A T G C A G T C A C G T A T G C A G T C A C G T A C T G A T G C C G T A C G A T A C T G A C T G C G T A
T A C G C T A G T A C G A G T C C G T A A G T C A G T C A C G T A C T G A G T C G A T C T A G C A C G T A C G T A C G T

HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer

Match Rank:10
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--CCTCCTGCATGGA
NNVCAGCTGB-----
 A C G T A C G T A T G C A G T C A C G T A T G C A G T C A C G T A C T G A T G C C G T A C G A T A C T G A C T G C G T A
C A T G T C A G T G A C G T A C G T C A T A C G T A G C G C A T T A C G A C T G A C G T A C G T A C G T A C G T A C G T