Information for 3-AGGVGTGTCACCTTCT (Motif 3)

C G T A A C T G A T C G T A G C A C T G A C G T T A C G C A G T A T G C C G T A G T A C A T G C A G C T C A G T A T G C A G C T
Reverse Opposite:
C T G A A T C G G T C A C T G A A T C G C A T G A C G T T A C G G C T A A T G C T G C A T A G C A T C G T A G C A G T C C G A T
p-value:1e-11
log p-value:-2.726e+01
Information Content per bp:1.688
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.57%
Number of Background Sequences with motif23.8
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets47.5 +/- 23.4bp
Average Position of motif in Background46.8 +/- 31.9bp
Strand Bias (log2 ratio + to - strand density)1.4
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:1
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:AGGVGTGTCACCTTCT
-----TGACACCT---
 C G T A A C T G A T C G T A G C A C T G A C G T T A C G C A G T A T G C C G T A G T A C A T G C A G C T C A G T A T G C A G C T
A C G T A C G T A C G T A C G T A C G T G A C T T C A G C T G A A G T C C T G A T A G C G A T C G A C T A C G T A C G T A C G T

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:2
Score:0.56
Offset:5
Orientation:forward strand
Alignment:AGGVGTGTCACCTTCT-
-----SNGCACCTGCHS
 C G T A A C T G A T C G T A G C A C T G A C G T T A C G C A G T A T G C C G T A G T A C A T G C A G C T C A G T A T G C A G C T A C G T
A C G T A C G T A C G T A C G T A C G T T A C G C T A G T A C G A G T C C G T A A G T C A G T C A C G T A C T G A G T C G A T C T A G C

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:3
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:AGGVGTGTCACCTTCT
---KTTCACACCT---
 C G T A A C T G A T C G T A G C A C T G A C G T T A C G C A G T A T G C C G T A G T A C A T G C A G C T C A G T A T G C A G C T
A C G T A C G T A C G T C A G T C A G T A C G T T A G C G C T A A G T C C T G A G T A C G A T C G C A T A C G T A C G T A C G T

TBX4/MA0806.1/Jaspar

Match Rank:4
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:AGGVGTGTCACCTTCT
-----TCACACCT---
 C G T A A C T G A T C G T A G C A C T G A C G T T A C G C A G T A T G C C G T A G T A C A T G C A G C T C A G T A T G C A G C T
A C G T A C G T A C G T A C G T A C G T G A C T T G A C C T G A A G T C T C G A A T G C A G T C G A C T A C G T A C G T A C G T

SNAI2/MA0745.1/Jaspar

Match Rank:5
Score:0.53
Offset:7
Orientation:reverse strand
Alignment:AGGVGTGTCACCTTCT
-------NCACCTGTN
 C G T A A C T G A T C G T A G C A C T G A C G T T A C G C A G T A T G C C G T A G T A C A T G C A G C T C A G T A T G C A G C T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A G T A C C T G A G A T C G A T C C G A T C A T G G A C T G A C T

PB0180.1_Sp4_2/Jaspar

Match Rank:6
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---AGGVGTGTCACCTTCT
CAAAGGCGTGGCCAG----
 A C G T A C G T A C G T C G T A A C T G A T C G T A G C A C T G A C G T T A C G C A G T A T G C C G T A G T A C A T G C A G C T C A G T A T G C A G C T
A G T C C G T A C G T A T C G A A T C G A C T G G T A C A C T G A C G T C T A G A C T G G A T C G A T C G T C A C A T G A C G T A C G T A C G T A C G T

TBX5/MA0807.1/Jaspar

Match Rank:7
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:AGGVGTGTCACCTTCT
-----TCACACCT---
 C G T A A C T G A T C G T A G C A C T G A C G T T A C G C A G T A T G C C G T A G T A C A T G C A G C T C A G T A T G C A G C T
A C G T A C G T A C G T A C G T A C G T G A C T T G A C T C G A A G T C T G C A G T A C A G T C G A C T A C G T A C G T A C G T

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:8
Score:0.53
Offset:6
Orientation:forward strand
Alignment:AGGVGTGTCACCTTCT
------NNCACCTGNN
 C G T A A C T G A T C G T A G C A C T G A C G T T A C G C A G T A T G C C G T A G T A C A T G C A G C T C A G T A T G C A G C T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C T G C A A G T C C G T A A G T C A G T C A C G T A C T G A T G C G T C A

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:9
Score:0.52
Offset:5
Orientation:forward strand
Alignment:AGGVGTGTCACCTTCT
-----TGTCANYT---
 C G T A A C T G A T C G T A G C A C T G A C G T T A C G C A G T A T G C C G T A G T A C A T G C A G C T C A G T A T G C A G C T
A C G T A C G T A C G T A C G T A C G T A G C T C A T G G C A T G A T C T G C A C T A G G A T C A C G T A C G T A C G T A C G T

TBX15/MA0803.1/Jaspar

Match Rank:10
Score:0.52
Offset:5
Orientation:reverse strand
Alignment:AGGVGTGTCACCTTCT
-----TCACACCT---
 C G T A A C T G A T C G T A G C A C T G A C G T T A C G C A G T A T G C C G T A G T A C A T G C A G C T C A G T A T G C A G C T
A C G T A C G T A C G T A C G T A C G T G A C T T G A C T C G A A T G C T G C A A G T C G A T C G A C T A C G T A C G T A C G T