Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
SVG |
1 |
| CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer | 1e-204 | -4.719e+02 | 0.0000 | 149.0 | 17.76% | 77.6 | 0.32% | motif file (matrix) |
svg |
2 |
| BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer | 1e-164 | -3.795e+02 | 0.0000 | 142.0 | 16.92% | 121.8 | 0.50% | motif file (matrix) |
svg |
3 |
| TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer | 1e-27 | -6.219e+01 | 0.0000 | 118.0 | 14.06% | 1092.9 | 4.46% | motif file (matrix) |
svg |
4 |
| TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer | 1e-24 | -5.687e+01 | 0.0000 | 104.0 | 12.40% | 934.8 | 3.81% | motif file (matrix) |
svg |
5 |
| HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer | 1e-21 | -5.040e+01 | 0.0000 | 127.0 | 15.14% | 1422.1 | 5.80% | motif file (matrix) |
svg |
6 |
| TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer | 1e-20 | -4.649e+01 | 0.0000 | 79.0 | 9.42% | 669.8 | 2.73% | motif file (matrix) |
svg |
7 |
| Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer | 1e-19 | -4.532e+01 | 0.0000 | 364.0 | 43.38% | 6976.1 | 28.44% | motif file (matrix) |
svg |
8 |
| Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer | 1e-16 | -3.908e+01 | 0.0000 | 100.0 | 11.92% | 1126.1 | 4.59% | motif file (matrix) |
svg |
9 |
| GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer | 1e-16 | -3.819e+01 | 0.0000 | 134.0 | 15.97% | 1796.6 | 7.32% | motif file (matrix) |
svg |
10 |
| CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer | 1e-16 | -3.739e+01 | 0.0000 | 213.0 | 25.39% | 3538.3 | 14.42% | motif file (matrix) |
svg |
11 |
| CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer | 1e-13 | -3.114e+01 | 0.0000 | 92.0 | 10.97% | 1125.8 | 4.59% | motif file (matrix) |
svg |
12 |
| Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer | 1e-13 | -3.059e+01 | 0.0000 | 182.0 | 21.69% | 3049.1 | 12.43% | motif file (matrix) |
svg |
13 |
| Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer | 1e-12 | -2.910e+01 | 0.0000 | 127.0 | 15.14% | 1878.0 | 7.66% | motif file (matrix) |
svg |
14 |
| HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer | 1e-12 | -2.907e+01 | 0.0000 | 113.0 | 13.47% | 1586.3 | 6.47% | motif file (matrix) |
svg |
15 |
| Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer | 1e-12 | -2.766e+01 | 0.0000 | 57.0 | 6.79% | 561.7 | 2.29% | motif file (matrix) |
svg |
16 |
| COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer | 1e-10 | -2.521e+01 | 0.0000 | 117.0 | 13.95% | 1773.8 | 7.23% | motif file (matrix) |
svg |
17 |
| Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer | 1e-10 | -2.418e+01 | 0.0000 | 244.0 | 29.08% | 4810.7 | 19.61% | motif file (matrix) |
svg |
18 |
| JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer | 1e-10 | -2.372e+01 | 0.0000 | 51.0 | 6.08% | 519.7 | 2.12% | motif file (matrix) |
svg |
19 |
| Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer | 1e-10 | -2.339e+01 | 0.0000 | 59.0 | 7.03% | 663.2 | 2.70% | motif file (matrix) |
svg |
20 |
| Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer | 1e-10 | -2.336e+01 | 0.0000 | 34.0 | 4.05% | 259.8 | 1.06% | motif file (matrix) |
svg |
21 |
| Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer | 1e-9 | -2.299e+01 | 0.0000 | 129.0 | 15.38% | 2104.7 | 8.58% | motif file (matrix) |
svg |
22 |
| HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer | 1e-9 | -2.277e+01 | 0.0000 | 69.0 | 8.22% | 859.9 | 3.51% | motif file (matrix) |
svg |
23 |
| Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer | 1e-9 | -2.250e+01 | 0.0000 | 27.0 | 3.22% | 173.1 | 0.71% | motif file (matrix) |
svg |
24 |
| Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-9 | -2.201e+01 | 0.0000 | 55.0 | 6.56% | 616.4 | 2.51% | motif file (matrix) |
svg |
25 |
| Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer | 1e-9 | -2.186e+01 | 0.0000 | 44.0 | 5.24% | 430.9 | 1.76% | motif file (matrix) |
svg |
26 |
| Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer | 1e-9 | -2.133e+01 | 0.0000 | 67.0 | 7.99% | 851.4 | 3.47% | motif file (matrix) |
svg |
27 |
| SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer | 1e-8 | -1.929e+01 | 0.0000 | 292.0 | 34.80% | 6321.1 | 25.77% | motif file (matrix) |
svg |
28 |
| BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer | 1e-8 | -1.859e+01 | 0.0000 | 53.0 | 6.32% | 643.6 | 2.62% | motif file (matrix) |
svg |
29 |
| AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-7 | -1.813e+01 | 0.0000 | 57.0 | 6.79% | 728.7 | 2.97% | motif file (matrix) |
svg |
30 |
| Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer | 1e-7 | -1.806e+01 | 0.0000 | 75.0 | 8.94% | 1089.6 | 4.44% | motif file (matrix) |
svg |
31 |
| Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer | 1e-7 | -1.633e+01 | 0.0000 | 171.0 | 20.38% | 3371.3 | 13.74% | motif file (matrix) |
svg |
32 |
| NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer | 1e-6 | -1.591e+01 | 0.0000 | 64.0 | 7.63% | 920.5 | 3.75% | motif file (matrix) |
svg |
33 |
| Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer | 1e-6 | -1.554e+01 | 0.0000 | 45.0 | 5.36% | 555.4 | 2.26% | motif file (matrix) |
svg |
34 |
| Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer | 1e-6 | -1.429e+01 | 0.0000 | 50.0 | 5.96% | 679.8 | 2.77% | motif file (matrix) |
svg |
35 |
| Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-6 | -1.392e+01 | 0.0000 | 293.0 | 34.92% | 6706.3 | 27.34% | motif file (matrix) |
svg |
36 |
| HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer | 1e-6 | -1.385e+01 | 0.0000 | 15.0 | 1.79% | 91.3 | 0.37% | motif file (matrix) |
svg |
37 |
| Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer | 1e-5 | -1.196e+01 | 0.0001 | 78.0 | 9.30% | 1350.3 | 5.50% | motif file (matrix) |
svg |
38 |
| EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer | 1e-5 | -1.175e+01 | 0.0001 | 70.0 | 8.34% | 1178.9 | 4.81% | motif file (matrix) |
svg |
39 |
| Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer | 1e-4 | -1.132e+01 | 0.0001 | 200.0 | 23.84% | 4411.5 | 17.98% | motif file (matrix) |
svg |
40 |
| Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer | 1e-4 | -1.034e+01 | 0.0003 | 19.0 | 2.26% | 185.7 | 0.76% | motif file (matrix) |
svg |
41 |
| Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer | 1e-4 | -9.396e+00 | 0.0007 | 54.0 | 6.44% | 907.4 | 3.70% | motif file (matrix) |
svg |
42 |
| Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer | 1e-3 | -7.952e+00 | 0.0030 | 57.0 | 6.79% | 1032.4 | 4.21% | motif file (matrix) |
svg |
43 |
| Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer | 1e-3 | -7.897e+00 | 0.0031 | 64.0 | 7.63% | 1198.2 | 4.88% | motif file (matrix) |
svg |
44 |
| Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer | 1e-3 | -7.515e+00 | 0.0045 | 110.0 | 13.11% | 2351.6 | 9.59% | motif file (matrix) |
svg |
45 |
| Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer | 1e-3 | -7.442e+00 | 0.0047 | 38.0 | 4.53% | 623.7 | 2.54% | motif file (matrix) |
svg |
46 |
| Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer | 1e-3 | -7.336e+00 | 0.0052 | 15.0 | 1.79% | 163.3 | 0.67% | motif file (matrix) |
svg |
47 |
| Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer | 1e-3 | -7.320e+00 | 0.0052 | 107.0 | 12.75% | 2288.5 | 9.33% | motif file (matrix) |
svg |
48 |
| Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer | 1e-3 | -7.298e+00 | 0.0052 | 20.0 | 2.38% | 255.8 | 1.04% | motif file (matrix) |
svg |
49 |
| Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer | 1e-3 | -6.990e+00 | 0.0068 | 17.0 | 2.03% | 205.7 | 0.84% | motif file (matrix) |
svg |
50 |
| NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer | 1e-2 | -6.861e+00 | 0.0076 | 85.0 | 10.13% | 1764.3 | 7.19% | motif file (matrix) |
svg |
51 |
| THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer | 1e-2 | -6.827e+00 | 0.0077 | 209.0 | 24.91% | 5025.4 | 20.49% | motif file (matrix) |
svg |
52 |
| REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer | 1e-2 | -6.699e+00 | 0.0086 | 3.0 | 0.36% | 6.3 | 0.03% | motif file (matrix) |
svg |
53 |
| USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer | 1e-2 | -6.531e+00 | 0.0100 | 21.0 | 2.50% | 292.1 | 1.19% | motif file (matrix) |
svg |
54 |
| Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer | 1e-2 | -6.177e+00 | 0.0140 | 79.0 | 9.42% | 1657.4 | 6.76% | motif file (matrix) |
svg |
55 |
| TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer | 1e-2 | -6.109e+00 | 0.0147 | 9.0 | 1.07% | 81.7 | 0.33% | motif file (matrix) |
svg |
56 |
| CRE(bZIP)/Promoter/Homer | 1e-2 | -5.975e+00 | 0.0165 | 12.0 | 1.43% | 133.5 | 0.54% | motif file (matrix) |
svg |
57 |
| HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer | 1e-2 | -5.936e+00 | 0.0169 | 27.0 | 3.22% | 434.7 | 1.77% | motif file (matrix) |
svg |
58 |
| MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer | 1e-2 | -5.935e+00 | 0.0169 | 42.0 | 5.01% | 772.2 | 3.15% | motif file (matrix) |
svg |
59 |
| Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer | 1e-2 | -5.489e+00 | 0.0255 | 84.0 | 10.01% | 1830.4 | 7.46% | motif file (matrix) |
svg |
60 |
| E-box(bHLH)/Promoter/Homer | 1e-2 | -5.374e+00 | 0.0281 | 5.0 | 0.60% | 31.2 | 0.13% | motif file (matrix) |
svg |
61 |
| Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer | 1e-2 | -5.102e+00 | 0.0363 | 15.0 | 1.79% | 207.5 | 0.85% | motif file (matrix) |
svg |
62 |
| Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer | 1e-2 | -4.674e+00 | 0.0548 | 59.0 | 7.03% | 1253.3 | 5.11% | motif file (matrix) |
svg |