Information for 5-GCTCDTAAAA (Motif 5)

T C A G T A G C G A C T G A T C C A T G A C G T G T C A G T C A C G T A G C T A
Reverse Opposite:
C G A T C G A T A C G T A C G T C G T A G T A C C T A G C T G A A T C G A G T C
p-value:1e-18
log p-value:-4.243e+01
Information Content per bp:1.712
Number of Target Sequences with motif51.0
Percentage of Target Sequences with motif6.08%
Number of Background Sequences with motif317.4
Percentage of Background Sequences with motif1.29%
Average Position of motif in Targets50.1 +/- 26.8bp
Average Position of motif in Background50.9 +/- 31.5bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXC13/MA0907.1/Jaspar

Match Rank:1
Score:0.92
Offset:0
Orientation:forward strand
Alignment:GCTCDTAAAA-
GCTCGTAAAAA
 T C A G T A G C G A C T G A T C C A T G A C G T G T C A G T C A C G T A G C T A A C G T
A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A

PH0068.1_Hoxc13/Jaspar

Match Rank:2
Score:0.91
Offset:-3
Orientation:forward strand
Alignment:---GCTCDTAAAA---
AAAGCTCGTAAAATTT
 A C G T A C G T A C G T T C A G T A G C G A C T G A T C C A T G A C G T G T C A G T C A C G T A G C T A A C G T A C G T A C G T
G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T

PH0048.1_Hoxa13/Jaspar

Match Rank:3
Score:0.90
Offset:-3
Orientation:forward strand
Alignment:---GCTCDTAAAA---
AAACCTCGTAAAATTT
 A C G T A C G T A C G T T C A G T A G C G A C T G A T C C A T G A C G T G T C A G T C A C G T A G C T A A C G T A C G T A C G T
G C T A C G T A G C T A A T C G T A G C A G C T G A T C C T A G A G C T C G T A C G T A G C T A G C T A G C A T A C G T C G A T

Hoxa11/MA0911.1/Jaspar

Match Rank:4
Score:0.84
Offset:0
Orientation:forward strand
Alignment:GCTCDTAAAA--
GGTCGTAAAATT
 T C A G T A G C G A C T G A T C C A T G A C G T G T C A G T C A C G T A G C T A A C G T A C G T
C T A G T C A G A G C T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C A T C G A T

HOXC12/MA0906.1/Jaspar

Match Rank:5
Score:0.83
Offset:0
Orientation:forward strand
Alignment:GCTCDTAAAA-
GGTCGTAAAAA
 T C A G T A G C G A C T G A T C C A T G A C G T G T C A G T C A C G T A G C T A A C G T
C T A G T C A G G A C T G T A C T C A G A G C T G C T A C G T A G C T A G T C A G C T A

HOXC11/MA0651.1/Jaspar

Match Rank:6
Score:0.83
Offset:0
Orientation:forward strand
Alignment:GCTCDTAAAA-
GGTCGTAAAAT
 T C A G T A G C G A C T G A T C C A T G A C G T G T C A G T C A C G T A G C T A A C G T
C T A G T C A G G A C T G A T C C T A G C G A T C G T A C G T A G T C A G C T A G C A T

HOXD12/MA0873.1/Jaspar

Match Rank:7
Score:0.82
Offset:0
Orientation:forward strand
Alignment:GCTCDTAAAA-
AGTCGTAAAAA
 T C A G T A G C G A C T G A T C C A T G A C G T G T C A G T C A C G T A G C T A A C G T
T C G A T C A G A G C T T A G C T C A G G A C T C G T A C T G A C G T A G C T A G T C A

HOXC10/MA0905.1/Jaspar

Match Rank:8
Score:0.82
Offset:1
Orientation:forward strand
Alignment:GCTCDTAAAA-
-GTCGTAAAAT
 T C A G T A G C G A C T G A T C C A T G A C G T G T C A G T C A C G T A G C T A A C G T
A C G T T C A G G A C T G T A C C T A G C G A T G C T A C G T A C G T A G C T A G C A T

HOXD11/MA0908.1/Jaspar

Match Rank:9
Score:0.81
Offset:1
Orientation:forward strand
Alignment:GCTCDTAAAA-
-GTCGTAAAAA
 T C A G T A G C G A C T G A T C C A T G A C G T G T C A G T C A C G T A G C T A A C G T
A C G T T C A G A C G T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C T A

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:10
Score:0.81
Offset:0
Orientation:forward strand
Alignment:GCTCDTAAAA
NCYAATAAAA
 T C A G T A G C G A C T G A T C C A T G A C G T G T C A G T C A C G T A G C T A
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A