Information for 4-CAGGGGATTA (Motif 3)

T G A C G C T A C A T G C T A G C T A G C A T G T G C A C G A T G C A T C G T A
Reverse Opposite:
G C A T C G T A C G T A A C G T G T A C G A T C G A T C G T A C C G A T A C T G
p-value:1e-26
log p-value:-6.106e+01
Information Content per bp:1.617
Number of Target Sequences with motif159.0
Percentage of Target Sequences with motif18.95%
Number of Background Sequences with motif1829.5
Percentage of Background Sequences with motif7.46%
Average Position of motif in Targets49.7 +/- 25.7bp
Average Position of motif in Background50.9 +/- 32.9bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.15
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Crx/MA0467.1/Jaspar

Match Rank:1
Score:0.91
Offset:0
Orientation:forward strand
Alignment:CAGGGGATTA-
AAGAGGATTAG
 T G A C G C T A C A T G C T A G C T A G C A T G T G C A C G A T G C A T C G T A A C G T
T C G A C T G A C T A G T C G A C T A G A C T G G T C A A C G T A G C T C G T A C T A G

PITX3/MA0714.1/Jaspar

Match Rank:2
Score:0.91
Offset:3
Orientation:reverse strand
Alignment:CAGGGGATTA--
---GGGATTANN
 T G A C G C T A C A T G C T A G C T A G C A T G T G C A C G A T G C A T C G T A A C G T A C G T
A C G T A C G T A C G T C T A G T C A G C A T G G T C A A G C T G A C T C G T A C T G A A T C G

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:3
Score:0.91
Offset:3
Orientation:forward strand
Alignment:CAGGGGATTA-
---RGGATTAR
 T G A C G C T A C A T G C T A G C T A G C A T G T G C A C G A T G C A T C G T A A C G T
A C G T A C G T A C G T T C A G C T A G C T A G T G C A C G A T C G A T C G T A C T A G

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:4
Score:0.91
Offset:2
Orientation:reverse strand
Alignment:CAGGGGATTA--
--VRGGATTARN
 T G A C G C T A C A T G C T A G C T A G C A T G T G C A C G A T G C A T C G T A A C G T A C G T
A C G T A C G T T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C

Pitx1/MA0682.1/Jaspar

Match Rank:5
Score:0.91
Offset:3
Orientation:reverse strand
Alignment:CAGGGGATTA-
---GGGATTAA
 T G A C G C T A C A T G C T A G C T A G C A T G T G C A C G A T G C A T C G T A A C G T
A C G T A C G T A C G T C A T G C T A G C T A G G T C A C G A T A G C T C G T A C T G A

GSC/MA0648.1/Jaspar

Match Rank:6
Score:0.89
Offset:2
Orientation:reverse strand
Alignment:CAGGGGATTA--
--NNGGATTAGN
 T G A C G C T A C A T G C T A G C T A G C A T G T G C A C G A T G C A T C G T A A C G T A C G T
A C G T A C G T C T A G T A C G T C A G T C A G T G C A A C G T G A C T C T G A C T A G A T G C

GSC2/MA0891.1/Jaspar

Match Rank:7
Score:0.89
Offset:2
Orientation:reverse strand
Alignment:CAGGGGATTA--
--GNGGATTAGN
 T G A C G C T A C A T G C T A G C T A G C A T G T G C A C G A T G C A T C G T A A C G T A C G T
A C G T A C G T C T A G T A G C T C A G C A T G T G C A C G A T C G A T C G T A C T A G A C T G

OTX2/MA0712.1/Jaspar

Match Rank:8
Score:0.89
Offset:3
Orientation:reverse strand
Alignment:CAGGGGATTA-
---NGGATTAA
 T G A C G C T A C A T G C T A G C T A G C A T G T G C A C G A T G C A T C G T A A C G T
A C G T A C G T A C G T T G C A T C A G C T A G G T C A A C G T G C A T C G T A C T G A

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:9
Score:0.89
Offset:2
Orientation:reverse strand
Alignment:CAGGGGATTA
--NGGGATTA
 T G A C G C T A C A T G C T A G C T A G C A T G T G C A C G A T G C A T C G T A
A C G T A C G T T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:10
Score:0.87
Offset:4
Orientation:reverse strand
Alignment:CAGGGGATTA--
----GGATTAGC
 T G A C G C T A C A T G C T A G C T A G C A T G T G C A C G A T G C A T C G T A A C G T A C G T
A C G T A C G T A C G T A C G T T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C