Information for 19-TATAAATCATGTT (Motif 23)

A C G T C T G A A G C T C G T A C G T A C G T A A C G T G T A C G T C A A C G T A C T G C G A T A C G T
Reverse Opposite:
G T C A C G T A A G T C C G T A A C G T A C T G G T C A A C G T A C G T C G A T C T G A A G C T C G T A
p-value:1e-9
log p-value:-2.275e+01
Information Content per bp:1.814
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets54.5 +/- 22.2bp
Average Position of motif in Background75.5 +/- 15.2bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0176.1_Sox5_2/Jaspar

Match Rank:1
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-TATAAATCATGTT-
NNCTNAATTATGANN
 A C G T A C G T C T G A A G C T C G T A C G T A C G T A A C G T G T A C G T C A A C G T A C T G C G A T A C G T A C G T
G A C T G A T C A T G C A C G T G C A T C T G A C G T A C G A T A C G T G T C A G A C T T C A G G C T A C G A T G C T A

Hoxc9/MA0485.1/Jaspar

Match Rank:2
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---TATAAATCATGTT
GGCCATAAATCAC---
 A C G T A C G T A C G T A C G T C T G A A G C T C G T A C G T A C G T A A C G T G T A C G T C A A C G T A C T G C G A T A C G T
C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C A C G T A C G T A C G T

Crx/MA0467.1/Jaspar

Match Rank:3
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:TATAAATCATGTT
--CTAATCCTCTT
 A C G T C T G A A G C T C G T A C G T A C G T A A C G T G T A C G T C A A C G T A C T G C G A T A C G T
A C G T A C G T G A T C C G A T C T G A C G T A A C G T A G T C G A T C A G C T G A T C G A C T A G C T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:4
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---TATAAATCATGTT
GGCCATAAATCA----
 A C G T A C G T A C G T A C G T C T G A A G C T C G T A C G T A C G T A A C G T G T A C G T C A A C G T A C T G C G A T A C G T
C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A A C G T A C G T A C G T A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:5
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---TATAAATCATGTT
NGYCATAAAWCH----
 A C G T A C G T A C G T A C G T C T G A A G C T C G T A C G T A C G T A A C G T G T A C G T C A A C G T A C T G C G A T A C G T
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A A C G T A C G T A C G T A C G T

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:6
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---TATAAATCATGTT
GGCCATAAATCA----
 A C G T A C G T A C G T A C G T C T G A A G C T C G T A C G T A C G T A A C G T G T A C G T C A A C G T A C T G C G A T A C G T
C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A A C G T A C G T A C G T A C G T

PH0150.1_Pou4f3/Jaspar

Match Rank:7
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---TATAAATCATGTT
AGTTATTAATGAGGTC
 A C G T A C G T A C G T A C G T C T G A A G C T C G T A C G T A C G T A A C G T G T A C G T C A A C G T A C T G C G A T A C G T
G C T A T C A G C A G T G C A T C G T A G A C T C G A T C G T A C G T A G A C T C A T G G T C A C T A G A C T G G A C T G A T C

Dmbx1/MA0883.1/Jaspar

Match Rank:8
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--TATAAATCATGTT--
NNNATTAATCCGNTTNA
 A C G T A C G T A C G T C T G A A G C T C G T A C G T A C G T A A C G T G T A C G T C A A C G T A C T G C G A T A C G T A C G T A C G T
G C A T C G A T T A G C T G C A G A C T C G A T C G T A C G T A A C G T A T G C A G T C A C T G C A T G G C A T G A C T G A T C C G T A

PH0025.1_Dmbx1/Jaspar

Match Rank:9
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--TATAAATCATGTT--
NNNATTAATCCGNTTNA
 A C G T A C G T A C G T C T G A A G C T C G T A C G T A C G T A A C G T G T A C G T C A A C G T A C T G C G A T A C G T A C G T A C G T
G C A T C G A T T A G C T G C A G A C T C G A T C G T A C G T A A C G T A T G C A G T C A C T G C A T G G C A T G A C T G A T C C G T A

PB0141.1_Isgf3g_2/Jaspar

Match Rank:10
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:TATAAATCATGTT----
---NNGTANTGTTTTNC
 A C G T C T G A A G C T C G T A C G T A C G T A A C G T G T A C G T C A A C G T A C T G C G A T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G A C T C T G A C A T G C G A T G T C A T G C A G C A T A T C G G A C T G C A T G C A T G C A T A T C G T G A C