Information for 17-CAGCCATCAATCA (Motif 21)

A T G C C G T A A C T G G T A C G T A C C G T A A C G T T G A C G T C A G T C A G C A T G T A C C G T A
Reverse Opposite:
C G A T A C T G C G T A C A G T A C G T A C T G G T C A A C G T A C T G A C T G T G A C C G A T A T C G
p-value:1e-10
log p-value:-2.466e+01
Information Content per bp:1.730
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif2.03%
Number of Background Sequences with motif55.4
Percentage of Background Sequences with motif0.23%
Average Position of motif in Targets60.2 +/- 24.2bp
Average Position of motif in Background53.1 +/- 36.8bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:1
Score:0.81
Offset:1
Orientation:reverse strand
Alignment:CAGCCATCAATCA
-RGCCATYAATCA
 A T G C C G T A A C T G G T A C G T A C C G T A A C G T T G A C G T C A G T C A G C A T G T A C C G T A
A C G T C T A G T A C G G A T C T G A C T C G A A C G T G A C T G C T A T C G A A G C T G A T C G C T A

Hoxa9/MA0594.1/Jaspar

Match Rank:2
Score:0.81
Offset:2
Orientation:forward strand
Alignment:CAGCCATCAATCA
--GCCATAAATCA
 A T G C C G T A A C T G G T A C G T A C C G T A A C G T T G A C G T C A G T C A G C A T G T A C C G T A
A C G T A C G T T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:3
Score:0.80
Offset:2
Orientation:forward strand
Alignment:CAGCCATCAATCA-
--GYCATCMATCAT
 A T G C C G T A A C T G G T A C G T A C C G T A A C G T T G A C G T C A G T C A G C A T G T A C C G T A A C G T
A C G T A C G T T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:4
Score:0.79
Offset:3
Orientation:forward strand
Alignment:CAGCCATCAATCA
---TCATCAATCA
 A T G C C G T A A C T G G T A C G T A C C G T A A C G T T G A C G T C A G T C A G C A T G T A C C G T A
A C G T A C G T A C G T G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A

PBX1/MA0070.1/Jaspar

Match Rank:5
Score:0.78
Offset:3
Orientation:forward strand
Alignment:CAGCCATCAATCA--
---CCATCAATCAAA
 A T G C C G T A A C T G G T A C G T A C C G T A A C G T T G A C G T C A G T C A G C A T G T A C C G T A A C G T A C G T
A C G T A C G T A C G T G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A

PH0134.1_Pbx1/Jaspar

Match Rank:6
Score:0.77
Offset:-1
Orientation:forward strand
Alignment:-CAGCCATCAATCA---
TCACCCATCAATAAACA
 A C G T A T G C C G T A A C T G G T A C G T A C C G T A A C G T T G A C G T C A G T C A G C A T G T A C C G T A A C G T A C G T A C G T
G A C T A G T C C G T A G A T C G T A C T G A C C T G A C G A T G T A C G T C A G C T A C G A T G T A C G C T A C G A T T G A C T G C A

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:7
Score:0.76
Offset:1
Orientation:forward strand
Alignment:CAGCCATCAATCA
-GGCCATAAATCA
 A T G C C G T A A C T G G T A C G T A C C G T A A C G T T G A C G T C A G T C A G C A T G T A C C G T A
A C G T C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:8
Score:0.75
Offset:1
Orientation:forward strand
Alignment:CAGCCATCAATCA
-GGCCATAAATCA
 A T G C C G T A A C T G G T A C G T A C C G T A A C G T T G A C G T C A G T C A G C A T G T A C C G T A
A C G T C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A

Hoxc9/MA0485.1/Jaspar

Match Rank:9
Score:0.73
Offset:1
Orientation:forward strand
Alignment:CAGCCATCAATCA-
-GGCCATAAATCAC
 A T G C C G T A A C T G G T A C G T A C C G T A A C G T T G A C G T C A G T C A G C A T G T A C C G T A A C G T
A C G T C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C

PB0144.1_Lef1_2/Jaspar

Match Rank:10
Score:0.71
Offset:1
Orientation:forward strand
Alignment:CAGCCATCAATCA----
-GAAGATCAATCACTTA
 A T G C C G T A A C T G G T A C G T A C C G T A A C G T T G A C G T C A G T C A G C A T G T A C C G T A A C G T A C G T A C G T A C G T
A C G T T A C G C G T A T C G A T A C G G C T A C G A T A G T C C G T A C T G A C A G T G A T C C T G A G T A C A G C T G C A T C G T A