Information for 9-TGVCCTCCAG (Motif 17)

C A G T A C T G T C G A T G A C G T A C A C G T A T G C T G A C C G T A T C A G
Reverse Opposite:
A G T C G C A T A C T G T A C G T G C A C A T G A C T G A G C T T G A C G T C A
p-value:1e-12
log p-value:-2.902e+01
Information Content per bp:1.559
Number of Target Sequences with motif27.0
Percentage of Target Sequences with motif3.22%
Number of Background Sequences with motif129.4
Percentage of Background Sequences with motif0.53%
Average Position of motif in Targets53.2 +/- 25.5bp
Average Position of motif in Background51.4 +/- 32.3bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:1
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:TGVCCTCCAG
TGACCYCT--
 C A G T A C T G T C G A T G A C G T A C A C G T A T G C T G A C C G T A T C A G
A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T A C G T A C G T

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-TGVCCTCCAG-
ATGCCCTGAGGC
 A C G T C A G T A C T G T C G A T G A C G T A C A C G T A T G C T G A C C G T A T C A G A C G T
G C T A C G A T C A T G A T G C A G T C A G T C G A C T T A C G T C G A C T A G A C T G T A G C

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:3
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-TGVCCTCCAG---
NTGCCCANNGGTNA
 A C G T C A G T A C T G T C G A T G A C G T A C A C G T A T G C T G A C C G T A T C A G A C G T A C G T A C G T
T G A C G C A T T C A G G T A C G A T C A G T C C G T A T A C G T C G A C T A G T C A G G A C T C A T G C T G A

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:4
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:TGVCCTCCAG
TGACCTYA--
 C A G T A C T G T C G A T G A C G T A C A C G T A T G C T G A C C G T A T C A G
A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T

AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer

Match Rank:5
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-TGVCCTCCAG-
WTGSCCTSAGGS
 A C G T C A G T A C T G T C G A T G A C G T A C A C G T A T G C T G A C C G T A T C A G A C G T
G C T A G A C T C A T G A T G C A G T C A G T C G A C T T A C G C T G A C T A G A C T G T A G C

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:6
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TGVCCTCCAG
TGACCT----
 C A G T A C T G T C G A T G A C G T A C A C G T A T G C T G A C C G T A T C A G
A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:7
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-TGVCCTCCAG
GTGACCTT---
 A C G T C A G T A C T G T C G A T G A C G T A C A C G T A T G C T G A C C G T A T C A G
A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T A C G T A C G T A C G T

Nr1h3::Rxra/MA0494.1/Jaspar

Match Rank:8
Score:0.60
Offset:0
Orientation:forward strand
Alignment:TGVCCTCCAG---------
TGACCTAAAGTAACCTCTG
 C A G T A C T G T C G A T G A C G T A C A C G T A T G C T G A C C G T A T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A G C T T C A G G T C A G T A C G A T C A G C T T C G A C T G A C T G A C T A G C G A T C T G A T C G A G T A C G T A C A G C T A G T C C A G T A C T G

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:9
Score:0.59
Offset:2
Orientation:forward strand
Alignment:TGVCCTCCAG--
--ACATCCTGNT
 C A G T A C T G T C G A T G A C G T A C A C G T A T G C T G A C C G T A T C A G A C G T A C G T
A C G T A C G T C T G A A T G C C G T A A C G T A G T C A G T C A C G T A C T G A T C G G C A T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-TGVCCTCCAG
NTGACCTTGA-
 A C G T C A G T A C T G T C G A T G A C G T A C A C G T A T G C T G A C C G T A T C A G
C A T G A G C T T A C G G T C A G T A C T A G C A G C T G A C T A T C G T C G A A C G T