Information for 6-TTTAATGAGCTTCCTT (Motif 11)

A G C T C G A T A C G T C G T A C G T A A C G T A C T G C G T A A C T G A G T C A G C T A C G T A T G C G T A C A G C T A C G T
Reverse Opposite:
G T C A C T G A C A T G A T C G C G T A C T G A C T A G A G T C C G A T G T A C C G T A A C G T C G A T C G T A C G T A C T G A
p-value:1e-13
log p-value:-3.221e+01
Information Content per bp:1.808
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.83%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets52.1 +/- 19.1bp
Average Position of motif in Background26.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POU6F2/MA0793.1/Jaspar

Match Rank:1
Score:0.77
Offset:1
Orientation:reverse strand
Alignment:TTTAATGAGCTTCCTT
-NTAATGAGCT-----
 A G C T C G A T A C G T C G T A C G T A A C G T A C T G C G T A A C T G A G T C A G C T A C G T A T G C G T A C A G C T A C G T
A C G T C G T A C G A T T G C A C T G A C A G T C A T G G T C A C T A G A T G C G A C T A C G T A C G T A C G T A C G T A C G T

PH0151.1_Pou6f1_1/Jaspar

Match Rank:2
Score:0.74
Offset:-3
Orientation:forward strand
Alignment:---TTTAATGAGCTTCCTT
GACGATAATGAGCTTGC--
 A C G T A C G T A C G T A G C T C G A T A C G T C G T A C G T A A C G T A C T G C G T A A C T G A G T C A G C T A C G T A T G C G T A C A G C T A C G T
T A C G G C T A T G A C T A C G G C T A C G A T C G T A C G T A A C G T C A T G C G T A A C T G A T C G G C A T C A G T C T A G G T A C A C G T A C G T

PH0152.1_Pou6f1_2/Jaspar

Match Rank:3
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---TTTAATGAGCTTCCTT
AAACATAATGAGGTTGC--
 A C G T A C G T A C G T A G C T C G A T A C G T C G T A C G T A A C G T A C T G C G T A A C T G A G T C A G C T A C G T A T G C G T A C A G C T A C G T
T C G A G T C A G C T A T A G C G C T A C G A T C G T A C G T A A C G T C A T G C G T A A C T G T A C G G C A T C A G T A C T G G T A C A C G T A C G T

GSX2/MA0893.1/Jaspar

Match Rank:4
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:TTTAATGAGCTTCCTT
NTTAATTAGN------
 A G C T C G A T A C G T C G T A C G T A A C G T A C T G C G T A A C T G A G T C A G C T A C G T A T G C G T A C A G C T A C G T
C A G T A G C T C G A T C G T A C G T A G C A T C A G T C T G A T A C G C A G T A C G T A C G T A C G T A C G T A C G T A C G T

NOTO/MA0710.1/Jaspar

Match Rank:5
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:TTTAATGAGCTTCCTT
NNTAATTAGN------
 A G C T C G A T A C G T C G T A C G T A A C G T A C T G C G T A A C T G A G T C A G C T A C G T A T G C G T A C A G C T A C G T
T A C G A G T C G A C T G T C A C G T A A C G T C A G T C G T A C T A G A T G C A C G T A C G T A C G T A C G T A C G T A C G T

LBX1/MA0618.1/Jaspar

Match Rank:6
Score:0.68
Offset:1
Orientation:forward strand
Alignment:TTTAATGAGCTTCCTT
-TTAATTAG-------
 A G C T C G A T A C G T C G T A C G T A A C G T A C T G C G T A A C T G A G T C A G C T A C G T A T G C G T A C A G C T A C G T
A C G T C G A T A G C T C G T A C G T A A G C T C G A T C T G A A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NKX6-1/MA0674.1/Jaspar

Match Rank:7
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:TTTAATGAGCTTCCTT
-TTAATTAN-------
 A G C T C G A T A C G T C G T A C G T A A C G T A C T G C G T A A C T G A G T C A G C T A C G T A T G C G T A C A G C T A C G T
A C G T C G A T A G C T C G T A C G T A C A G T C A G T C T G A A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NKX6-2/MA0675.1/Jaspar

Match Rank:8
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:TTTAATGAGCTTCCTT
-TTAATTAN-------
 A G C T C G A T A C G T C G T A C G T A A C G T A C T G C G T A A C T G A G T C A G C T A C G T A T G C G T A C A G C T A C G T
A C G T C G A T G A C T C G T A C G T A C G A T C A G T C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

GSX1/MA0892.1/Jaspar

Match Rank:9
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:TTTAATGAGCTTCCTT
NNTAATTAGN------
 A G C T C G A T A C G T C G T A C G T A A C G T A C T G C G T A A C T G A G T C A G C T A C G T A T G C G T A C A G C T A C G T
C G A T A G C T G C A T C G T A C G T A A G C T C A G T C T G A T A C G C A T G A C G T A C G T A C G T A C G T A C G T A C G T

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:10
Score:0.66
Offset:2
Orientation:forward strand
Alignment:TTTAATGAGCTTCCTT
--TAATTAGN------
 A G C T C G A T A C G T C G T A C G T A A C G T A C T G C G T A A C T G A G T C A G C T A C G T A T G C G T A C A G C T A C G T
A C G T A C G T A G C T G T C A C G T A A C G T A C G T C T G A T C A G A T G C A C G T A C G T A C G T A C G T A C G T A C G T