Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
SVG |
1 |
| CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer | 1e-127 | -2.929e+02 | 0.0000 | 113.0 | 13.36% | 166.1 | 0.42% | motif file (matrix) |
svg |
2 |
| BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer | 1e-103 | -2.378e+02 | 0.0000 | 121.0 | 14.30% | 342.9 | 0.86% | motif file (matrix) |
svg |
3 |
| TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer | 1e-51 | -1.184e+02 | 0.0000 | 162.0 | 19.15% | 1869.4 | 4.70% | motif file (matrix) |
svg |
4 |
| TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer | 1e-43 | -1.009e+02 | 0.0000 | 135.0 | 15.96% | 1510.3 | 3.79% | motif file (matrix) |
svg |
5 |
| TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer | 1e-40 | -9.404e+01 | 0.0000 | 113.0 | 13.36% | 1130.9 | 2.84% | motif file (matrix) |
svg |
6 |
| GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer | 1e-24 | -5.638e+01 | 0.0000 | 137.0 | 16.19% | 2419.4 | 6.08% | motif file (matrix) |
svg |
7 |
| CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer | 1e-22 | -5.294e+01 | 0.0000 | 218.0 | 25.77% | 5153.5 | 12.94% | motif file (matrix) |
svg |
8 |
| Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer | 1e-22 | -5.208e+01 | 0.0000 | 104.0 | 12.29% | 1603.9 | 4.03% | motif file (matrix) |
svg |
9 |
| REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer | 1e-21 | -5.004e+01 | 0.0000 | 15.0 | 1.77% | 11.1 | 0.03% | motif file (matrix) |
svg |
10 |
| Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer | 1e-18 | -4.283e+01 | 0.0000 | 339.0 | 40.07% | 10334.4 | 25.96% | motif file (matrix) |
svg |
11 |
| Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer | 1e-16 | -3.781e+01 | 0.0000 | 56.0 | 6.62% | 683.7 | 1.72% | motif file (matrix) |
svg |
12 |
| Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer | 1e-15 | -3.516e+01 | 0.0000 | 35.0 | 4.14% | 288.3 | 0.72% | motif file (matrix) |
svg |
13 |
| Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer | 1e-14 | -3.450e+01 | 0.0000 | 75.0 | 8.87% | 1226.7 | 3.08% | motif file (matrix) |
svg |
14 |
| Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer | 1e-14 | -3.432e+01 | 0.0000 | 42.0 | 4.96% | 431.4 | 1.08% | motif file (matrix) |
svg |
15 |
| JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer | 1e-13 | -3.217e+01 | 0.0000 | 57.0 | 6.74% | 808.0 | 2.03% | motif file (matrix) |
svg |
16 |
| Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer | 1e-13 | -3.207e+01 | 0.0000 | 58.0 | 6.86% | 835.0 | 2.10% | motif file (matrix) |
svg |
17 |
| Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer | 1e-13 | -3.203e+01 | 0.0000 | 64.0 | 7.57% | 989.5 | 2.49% | motif file (matrix) |
svg |
18 |
| AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-12 | -2.790e+01 | 0.0000 | 65.0 | 7.68% | 1116.0 | 2.80% | motif file (matrix) |
svg |
19 |
| Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer | 1e-11 | -2.746e+01 | 0.0000 | 80.0 | 9.46% | 1564.5 | 3.93% | motif file (matrix) |
svg |
20 |
| BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer | 1e-11 | -2.677e+01 | 0.0000 | 59.0 | 6.97% | 978.8 | 2.46% | motif file (matrix) |
svg |
21 |
| COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer | 1e-9 | -2.299e+01 | 0.0000 | 119.0 | 14.07% | 3030.1 | 7.61% | motif file (matrix) |
svg |
22 |
| HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer | 1e-9 | -2.246e+01 | 0.0000 | 84.0 | 9.93% | 1866.8 | 4.69% | motif file (matrix) |
svg |
23 |
| CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer | 1e-8 | -1.902e+01 | 0.0000 | 70.0 | 8.27% | 1549.4 | 3.89% | motif file (matrix) |
svg |
24 |
| Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-8 | -1.871e+01 | 0.0000 | 57.0 | 6.74% | 1152.2 | 2.89% | motif file (matrix) |
svg |
25 |
| HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer | 1e-6 | -1.404e+01 | 0.0000 | 77.0 | 9.10% | 2017.0 | 5.07% | motif file (matrix) |
svg |
26 |
| Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer | 1e-5 | -1.356e+01 | 0.0000 | 131.0 | 15.48% | 4069.1 | 10.22% | motif file (matrix) |
svg |
27 |
| Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer | 1e-5 | -1.318e+01 | 0.0000 | 189.0 | 22.34% | 6441.0 | 16.18% | motif file (matrix) |
svg |
28 |
| Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer | 1e-5 | -1.305e+01 | 0.0000 | 56.0 | 6.62% | 1341.7 | 3.37% | motif file (matrix) |
svg |
29 |
| EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer | 1e-5 | -1.190e+01 | 0.0001 | 87.0 | 10.28% | 2509.9 | 6.30% | motif file (matrix) |
svg |
30 |
| Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer | 1e-5 | -1.161e+01 | 0.0001 | 50.0 | 5.91% | 1206.7 | 3.03% | motif file (matrix) |
svg |
31 |
| Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer | 1e-4 | -1.139e+01 | 0.0001 | 125.0 | 14.78% | 4013.5 | 10.08% | motif file (matrix) |
svg |
32 |
| Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer | 1e-4 | -1.121e+01 | 0.0002 | 87.0 | 10.28% | 2556.1 | 6.42% | motif file (matrix) |
svg |
33 |
| Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer | 1e-4 | -1.065e+01 | 0.0003 | 138.0 | 16.31% | 4602.5 | 11.56% | motif file (matrix) |
svg |
34 |
| Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer | 1e-4 | -1.026e+01 | 0.0004 | 90.0 | 10.64% | 2740.7 | 6.88% | motif file (matrix) |
svg |
35 |
| Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer | 1e-4 | -9.978e+00 | 0.0005 | 19.0 | 2.25% | 306.3 | 0.77% | motif file (matrix) |
svg |
36 |
| Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer | 1e-3 | -9.068e+00 | 0.0012 | 37.0 | 4.37% | 887.3 | 2.23% | motif file (matrix) |
svg |
37 |
| Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer | 1e-3 | -8.983e+00 | 0.0012 | 87.0 | 10.28% | 2726.1 | 6.85% | motif file (matrix) |
svg |
38 |
| Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer | 1e-3 | -8.818e+00 | 0.0014 | 17.0 | 2.01% | 280.9 | 0.71% | motif file (matrix) |
svg |
39 |
| THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer | 1e-3 | -8.501e+00 | 0.0019 | 219.0 | 25.89% | 8270.7 | 20.77% | motif file (matrix) |
svg |
40 |
| RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer | 1e-3 | -8.291e+00 | 0.0023 | 6.0 | 0.71% | 40.5 | 0.10% | motif file (matrix) |
svg |
41 |
| n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer | 1e-3 | -7.895e+00 | 0.0033 | 35.0 | 4.14% | 875.2 | 2.20% | motif file (matrix) |
svg |
42 |
| Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer | 1e-3 | -7.865e+00 | 0.0033 | 38.0 | 4.49% | 980.9 | 2.46% | motif file (matrix) |
svg |
43 |
| NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer | 1e-3 | -7.673e+00 | 0.0039 | 6.0 | 0.71% | 45.2 | 0.11% | motif file (matrix) |
svg |
44 |
| MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer | 1e-3 | -7.458e+00 | 0.0048 | 44.0 | 5.20% | 1216.9 | 3.06% | motif file (matrix) |
svg |
45 |
| Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer | 1e-3 | -7.213e+00 | 0.0060 | 59.0 | 6.97% | 1790.1 | 4.50% | motif file (matrix) |
svg |
46 |
| HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer | 1e-3 | -7.057e+00 | 0.0068 | 44.0 | 5.20% | 1241.6 | 3.12% | motif file (matrix) |
svg |
47 |
| Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer | 1e-3 | -7.054e+00 | 0.0068 | 17.0 | 2.01% | 328.9 | 0.83% | motif file (matrix) |
svg |
48 |
| USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer | 1e-2 | -6.857e+00 | 0.0080 | 24.0 | 2.84% | 554.7 | 1.39% | motif file (matrix) |
svg |
49 |
| Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer | 1e-2 | -6.823e+00 | 0.0081 | 45.0 | 5.32% | 1293.7 | 3.25% | motif file (matrix) |
svg |
50 |
| Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer | 1e-2 | -6.772e+00 | 0.0083 | 31.0 | 3.66% | 794.1 | 1.99% | motif file (matrix) |
svg |
51 |
| PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer | 1e-2 | -6.211e+00 | 0.0143 | 58.0 | 6.86% | 1832.2 | 4.60% | motif file (matrix) |
svg |
52 |
| TATA-Box(TBP)/Promoter/Homer | 1e-2 | -6.170e+00 | 0.0146 | 74.0 | 8.75% | 2467.5 | 6.20% | motif file (matrix) |
svg |
53 |
| Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer | 1e-2 | -6.009e+00 | 0.0169 | 45.0 | 5.32% | 1350.3 | 3.39% | motif file (matrix) |
svg |
54 |
| Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer | 1e-2 | -5.942e+00 | 0.0177 | 36.0 | 4.26% | 1020.6 | 2.56% | motif file (matrix) |
svg |
55 |
| MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer | 1e-2 | -5.915e+00 | 0.0179 | 48.0 | 5.67% | 1471.6 | 3.70% | motif file (matrix) |
svg |
56 |
| TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer | 1e-2 | -5.637e+00 | 0.0232 | 10.0 | 1.18% | 167.4 | 0.42% | motif file (matrix) |
svg |
57 |
| Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer | 1e-2 | -5.581e+00 | 0.0241 | 34.0 | 4.02% | 970.9 | 2.44% | motif file (matrix) |
svg |
58 |
| GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer | 1e-2 | -5.531e+00 | 0.0249 | 7.0 | 0.83% | 92.3 | 0.23% | motif file (matrix) |
svg |
59 |
| Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer | 1e-2 | -5.363e+00 | 0.0289 | 83.0 | 9.81% | 2919.9 | 7.33% | motif file (matrix) |
svg |
60 |
| AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer | 1e-2 | -5.243e+00 | 0.0321 | 60.0 | 7.09% | 1999.3 | 5.02% | motif file (matrix) |
svg |
61 |
| Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer | 1e-2 | -5.214e+00 | 0.0324 | 165.0 | 19.50% | 6431.7 | 16.15% | motif file (matrix) |
svg |
62 |
| HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer | 1e-2 | -5.208e+00 | 0.0324 | 9.0 | 1.06% | 150.8 | 0.38% | motif file (matrix) |
svg |
63 |
| Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer | 1e-2 | -5.089e+00 | 0.0356 | 16.0 | 1.89% | 366.1 | 0.92% | motif file (matrix) |
svg |
64 |
| Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer | 1e-2 | -4.981e+00 | 0.0390 | 10.0 | 1.18% | 184.6 | 0.46% | motif file (matrix) |
svg |
65 |
| SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer | 1e-2 | -4.948e+00 | 0.0398 | 272.0 | 32.15% | 11250.9 | 28.26% | motif file (matrix) |
svg |
66 |
| Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer | 1e-2 | -4.765e+00 | 0.0470 | 4.0 | 0.47% | 37.6 | 0.09% | motif file (matrix) |
svg |
67 |
| bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer | 1e-2 | -4.658e+00 | 0.0515 | 15.0 | 1.77% | 351.6 | 0.88% | motif file (matrix) |
svg |
68 |
| Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-2 | -4.649e+00 | 0.0515 | 243.0 | 28.72% | 10005.9 | 25.13% | motif file (matrix) |
svg |
69 |
| Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer | 1e-2 | -4.639e+00 | 0.0515 | 38.0 | 4.49% | 1189.6 | 2.99% | motif file (matrix) |
svg |
70 |
| NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer | 1e-2 | -4.606e+00 | 0.0520 | 46.0 | 5.44% | 1504.7 | 3.78% | motif file (matrix) |
svg |