Information for 2-CCAGCAGGGGGCG (Motif 5)

A G T C A G T C G C T A A T C G T G A C C G T A A C T G C T A G A T C G C T A G A C T G G T A C T C A G
Reverse Opposite:
A G T C A C T G G T A C A G T C T A G C A G T C A G T C C G A T A C T G A T G C C A G T A C T G A C T G
p-value:1e-12
log p-value:-2.768e+01
Information Content per bp:1.728
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif3.67%
Number of Background Sequences with motif140.3
Percentage of Background Sequences with motif0.30%
Average Position of motif in Targets48.8 +/- 27.3bp
Average Position of motif in Background53.0 +/- 29.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.91
Offset:-1
Orientation:reverse strand
Alignment:-CCAGCAGGGGGCG------
GCCASCAGGGGGCGCYVNNG
 A C G T A G T C A G T C G C T A A T C G T G A C C G T A A C T G C T A G A T C G C T A G A C T G G T A C T C A G A C G T A C G T A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.88
Offset:-3
Orientation:forward strand
Alignment:---CCAGCAGGGGGCG---
TGGCCACCAGGGGGCGCTA
 A C G T A C G T A C G T A G T C A G T C G C T A A T C G T G A C C G T A A C T G C T A G A T C G C T A G A C T G G T A C T C A G A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.84
Offset:-3
Orientation:reverse strand
Alignment:---CCAGCAGGGGGCG----
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T A G T C A G T C G C T A A T C G T G A C C G T A A C T G C T A G A T C G C T A G A C T G G T A C T C A G A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:4
Score:0.75
Offset:-2
Orientation:reverse strand
Alignment:--CCAGCAGGGGGCG
DCHCAGCAGGRGGCC
 A C G T A C G T A G T C A G T C G C T A A T C G T G A C C G T A A C T G C T A G A T C G C T A G A C T G G T A C T C A G
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-CCAGCAGGGGGCG
CACAGCAGGGGG--
 A C G T A G T C A G T C G C T A A T C G T G A C C G T A A C T G C T A G A T C G C T A G A C T G G T A C T C A G
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T

ZIC4/MA0751.1/Jaspar

Match Rank:6
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--CCAGCAGGGGGCG
NCNCAGCGGGGGGTC
 A C G T A C G T A G T C A G T C G C T A A T C G T G A C C G T A A C T G C T A G A T C G C T A G A C T G G T A C T C A G
C A T G T G A C C T G A G A T C G T C A T C A G G A T C C T A G C A T G C A T G C A T G C A T G C A T G A G C T T G A C

PB0076.1_Sp4_1/Jaspar

Match Rank:7
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:CCAGCAGGGGGCG-----
-NNNAAGGGGGCGGGNNN
 A G T C A G T C G C T A A T C G T G A C C G T A A C T G C T A G A T C G C T A G A C T G G T A C T C A G A C G T A C G T A C G T A C G T A C G T
A C G T T A C G T C G A A T C G C T G A C T G A C T A G C A T G C T A G A T C G A C T G G A T C A C T G A C T G C A T G C T G A G A T C T G A C

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:8
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CCAGCAGGGGGCG
-SDGCAGGTGCNS
 A G T C A G T C G C T A A T C G T G A C C G T A A C T G C T A G A T C G C T A G A C T G G T A C T C A G
A C G T A T C G C T A G C T A G A G T C C G T A A C T G A C T G A C G T A C T G A T G C G A T C A T G C

PB0101.1_Zic1_1/Jaspar

Match Rank:9
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CCAGCAGGGGGCG
CACCCCCGGGGGGG-
 A C G T A C G T A G T C A G T C G C T A A T C G T G A C C G T A A C T G C T A G A T C G C T A G A C T G G T A C T C A G
A T G C G T C A G A T C G T A C G T A C A T G C T A G C A T C G T A C G A C T G A C T G C A T G A C T G A T C G A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:10
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----CCAGCAGGGGGCG
CCACACAGCAGGAGA--
 A C G T A C G T A C G T A C G T A G T C A G T C G C T A A T C G T G A C C G T A A C T G C T A G A T C G C T A G A C T G G T A C T C A G
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T