Information for 1-GAGTTTCTGA (Motif 3)

A C T G T G C A T C A G A G C T A G C T C G A T G A T C C G A T T A C G G T C A
Reverse Opposite:
C A G T A T G C G C T A C T A G C G T A C T G A C T G A A G T C A C G T T G A C
p-value:1e-13
log p-value:-3.032e+01
Information Content per bp:1.718
Number of Target Sequences with motif29.0
Percentage of Target Sequences with motif6.65%
Number of Background Sequences with motif524.3
Percentage of Background Sequences with motif1.14%
Average Position of motif in Targets45.6 +/- 24.3bp
Average Position of motif in Background50.4 +/- 29.5bp
Strand Bias (log2 ratio + to - strand density)1.1
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rarg/MA0859.1/Jaspar

Match Rank:1
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GAGTTTCTGA----
TTGACCTTTTGACCTT
 A C G T A C G T A C T G T G C A T C A G A G C T A G C T C G A T G A T C C G A T T A C G G T C A A C G T A C G T A C G T A C G T
C G A T A G C T T C A G T G C A T G A C G T A C A G C T G A C T G C A T A G C T T C A G T G C A T G A C A G T C A G C T A G C T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:2
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GAGTTTCTGA
CGGTTTCAAA
 A C T G T G C A T C A G A G C T A G C T C G A T G A T C C G A T T A C G G T C A
T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A

RARA/MA0729.1/Jaspar

Match Rank:3
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----GAGTTTCTGA----
CATTGACCTTTTGACCTC
 A C G T A C G T A C G T A C G T A C T G T G C A T C A G A G C T A G C T C G A T G A T C C G A T T A C G G T C A A C G T A C G T A C G T A C G T
T G A C G T C A C G A T A G C T C T A G C G T A G T A C G T A C A C G T G C A T G C A T A G C T A T C G T C G A G T A C A G T C A G C T G A T C

Rarb/MA0857.1/Jaspar

Match Rank:4
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GAGTTTCTGA-----
TGACCTTTTGACCTTT
 A C G T A C T G T G C A T C A G A G C T A G C T C G A T G A T C C G A T T A C G G T C A A C G T A C G T A C G T A C G T A C G T
G A C T T C A G T C G A T G A C A G T C A G C T G A C T C G A T A G C T T A C G G T C A T G A C G T A C A G C T G A C T C G A T

PH0077.1_Hoxd12/Jaspar

Match Rank:5
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--GAGTTTCTGA-----
NNNATTTTACGACNNTN
 A C G T A C G T A C T G T G C A T C A G A G C T A G C T C G A T G A T C C G A T T A C G G T C A A C G T A C G T A C G T A C G T A C G T
G T C A C G T A C T A G C T G A C G A T C G A T C G A T C G A T C G T A A G T C C A T G C T G A A G T C A G T C G A C T C G A T C T A G

RELA/MA0107.1/Jaspar

Match Rank:6
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GAGTTTCTGA
GGGAATTTCC--
 A C G T A C G T A C T G T G C A T C A G A G C T A G C T C G A T G A T C C G A T T A C G G T C A
A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C A C G T A C G T

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:GAGTTTCTGA
TGGTTTCAGT
 A C T G T G C A T C A G A G C T A G C T C G A T G A T C C G A T T A C G G T C A
G A C T C T A G T A C G C G A T G C A T A C G T T A G C T C G A A T C G C G A T

HOXC10/MA0905.1/Jaspar

Match Rank:8
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:GAGTTTCTGA-
-NTTTTACGAC
 A C T G T G C A T C A G A G C T A G C T C G A T G A T C C G A T T A C G G T C A A C G T
A C G T C G T A C G A T G C A T G C A T C G A T C G T A G A T C C A T G C T G A A G T C

PH0068.1_Hoxc13/Jaspar

Match Rank:9
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-GAGTTTCTGA-----
NAATTTTACGAGNTNN
 A C G T A C T G T G C A T C A G A G C T A G C T C G A T G A T C C G A T T A C G G T C A A C G T A C G T A C G T A C G T A C G T
G C T A C T G A C G T A C G A T C G A T C G A T C G A T C T G A G A T C C T A G C T G A A T C G T G A C C G A T C G A T C G A T

PH0076.1_Hoxd11/Jaspar

Match Rank:10
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--GAGTTTCTGA-----
ANNATTTTACGACNTNA
 A C G T A C G T A C T G T G C A T C A G A G C T A G C T C G A T G A T C C G A T T A C G G T C A A C G T A C G T A C G T A C G T A C G T
G T C A C T A G C T A G C G T A C G A T C A G T C G A T C G A T C G T A A G T C C A T G C T G A A G T C A G T C G A C T C G A T C T G A