Information for 6-CTAATTAGCA (Motif 25)

A G T C A C G T C G T A C G T A A C G T A C G T C G T A A C T G A G T C C G T A
Reverse Opposite:
A C G T C T A G G T A C A C G T C G T A C G T A A C G T A C G T C G T A A C T G
p-value:1e-6
log p-value:-1.411e+01
Information Content per bp:1.939
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.92%
Number of Background Sequences with motif7.8
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets57.2 +/- 29.1bp
Average Position of motif in Background44.3 +/- 29.3bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

LHX6/MA0658.1/Jaspar

Match Rank:1
Score:0.87
Offset:-1
Orientation:reverse strand
Alignment:-CTAATTAGCA
NCTAATTAGT-
 A C G T A G T C A C G T C G T A C G T A A C G T A C G T C G T A A C T G A G T C C G T A
T C A G A G T C G A C T T C G A T C G A A C G T A G C T T C G A T C A G A G C T A C G T

LHX2/MA0700.1/Jaspar

Match Rank:2
Score:0.87
Offset:-1
Orientation:forward strand
Alignment:-CTAATTAGCA
ACTAATTAAC-
 A C G T A G T C A C G T C G T A C G T A A C G T A C G T C G T A A C T G A G T C C G T A
T C G A A G T C G A C T G T C A C T G A A C G T A C G T C T G A C T G A A T G C A C G T

PAX4/MA0068.2/Jaspar

Match Rank:3
Score:0.86
Offset:0
Orientation:forward strand
Alignment:CTAATTAGCA
CTAATTAG--
 A G T C A C G T C G T A C G T A A C G T A C G T C G T A A C T G A G T C C G T A
A G T C C A G T G C T A C G T A A C G T G C A T G T C A T C A G A C G T A C G T

VSX2/MA0726.1/Jaspar

Match Rank:4
Score:0.86
Offset:0
Orientation:forward strand
Alignment:CTAATTAGCA
CTAATTAG--
 A G T C A C G T C G T A C G T A A C G T A C G T C G T A A C T G A G T C C G T A
A G T C G A C T G C T A T G C A G A C T G C A T C T G A A C T G A C G T A C G T

PH0034.1_Gbx2/Jaspar

Match Rank:5
Score:0.86
Offset:-5
Orientation:reverse strand
Alignment:-----CTAATTAGCA--
AANCGCTAATTAGCNNN
 A C G T A C G T A C G T A C G T A C G T A G T C A C G T C G T A C G T A A C G T A C G T C G T A A C T G A G T C C G T A A C G T A C G T
G T C A T G C A G A C T A T G C T C A G A T G C A G C T G T C A G C T A C A G T A C G T C T G A T A C G A G T C A C T G A T G C G C A T

PH0098.1_Lhx8/Jaspar

Match Rank:6
Score:0.86
Offset:-4
Orientation:forward strand
Alignment:----CTAATTAGCA---
ACCCCTAATTAGCGGTG
 A C G T A C G T A C G T A C G T A G T C A C G T C G T A C G T A A C G T A C G T C G T A A C T G A G T C C G T A A C G T A C G T A C G T
G C T A T G A C T G A C T G A C T G A C G A C T T C G A C T G A A G C T A G C T C T G A A C T G A G T C C A T G C A T G A C G T C T A G

EMX2/MA0886.1/Jaspar

Match Rank:7
Score:0.86
Offset:-1
Orientation:reverse strand
Alignment:-CTAATTAGCA
NCTAATTANN-
 A C G T A G T C A C G T C G T A C G T A A C G T A C G T C G T A A C T G A G T C C G T A
T A C G A G T C A C G T G T C A C G T A A C G T C A G T C T G A T A C G A G T C A C G T

PH0155.1_Prrx2/Jaspar

Match Rank:8
Score:0.86
Offset:-5
Orientation:reverse strand
Alignment:-----CTAATTAGCA--
NTTCGCTAATTAGCTNT
 A C G T A C G T A C G T A C G T A C G T A G T C A C G T C G T A C G T A A C G T A C G T C G T A A C T G A G T C C G T A A C G T A C G T
G A C T G C A T G A C T G T A C T C A G G A T C A G C T C T G A C G T A G A C T A G C T C T G A C T A G A G T C C A G T A C G T G C A T

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:9
Score:0.85
Offset:-1
Orientation:reverse strand
Alignment:-CTAATTAGCA
NCTAATTA---
 A C G T A G T C A C G T C G T A C G T A A C G T A C G T C G T A A C T G A G T C C G T A
T A C G A G T C A G C T G T C A C G T A A C G T A C G T C T G A A C G T A C G T A C G T

PH0032.1_Evx2/Jaspar

Match Rank:10
Score:0.85
Offset:-4
Orientation:reverse strand
Alignment:----CTAATTAGCA---
ANCGCTAATTAGCGGTN
 A C G T A C G T A C G T A C G T A G T C A C G T C G T A C G T A A C G T A C G T C G T A A C T G A G T C C G T A A C G T A C G T A C G T
C G T A T G A C T G A C T A C G T A G C A G C T T G C A C G T A A C G T A C G T C T G A T A C G A G T C C A T G C T A G A C G T T C A G