Information for 4-AATTACCTAG (Motif 12)

G T C A C G T A A C G T C A G T C T G A A T G C A G T C A C G T C G T A A T C G
Reverse Opposite:
A T G C A C G T C G T A A C T G A T C G A G C T G C T A C G T A A C G T A C G T
p-value:1e-4
log p-value:-1.069e+01
Information Content per bp:1.826
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif9.68%
Number of Background Sequences with motif31.4
Percentage of Background Sequences with motif0.18%
Average Position of motif in Targets29.0 +/- 23.0bp
Average Position of motif in Background51.1 +/- 23.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0074.1_Hoxd1/Jaspar

Match Rank:1
Score:0.67
Offset:-6
Orientation:forward strand
Alignment:------AATTACCTAG-
TAAACTAATTAGCTGTA
 A C G T A C G T A C G T A C G T A C G T A C G T G T C A C G T A A C G T C A G T C T G A A T G C A G T C A C G T C G T A A T C G A C G T
C G A T T C G A G C T A T C A G A G T C G A C T T G C A C G T A C G A T A C G T C T G A T C A G A G T C A C G T A C T G C A G T G C T A

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:2
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:AATTACCTAG--
--TGACCTARTT
 G T C A C G T A A C G T C A G T C T G A A T G C A G T C A C G T C G T A A T C G A C G T A C G T
A C G T A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:3
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:AATTACCTAG-----
-TTGACCTANTTATN
 G T C A C G T A A C G T C A G T C T G A A T G C A G T C A C G T C G T A A T C G A C G T A C G T A C G T A C G T A C G T
A C G T A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

EN2/MA0642.1/Jaspar

Match Rank:4
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---AATTACCTAG
CCCAATTAGC---
 A C G T A C G T A C G T G T C A C G T A A C G T C A G T C T G A A T G C A G T C A C G T C G T A A T C G
T A G C A T G C A G T C T G C A T G C A A C G T A G C T C T G A T A C G A T G C A C G T A C G T A C G T

Esrra/MA0592.2/Jaspar

Match Rank:5
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:AATTACCTAG--
-ATGACCTTGAA
 G T C A C G T A A C G T C A G T C T G A A T G C A G T C A C G T C G T A A T C G A C G T A C G T
A C G T C G T A A G C T T A C G T G C A T G A C T G A C A G C T A G C T A T C G C T G A T G C A

RORA/MA0071.1/Jaspar

Match Rank:6
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:AATTACCTAG--
--TGACCTTGAT
 G T C A C G T A A C G T C A G T C T G A A T G C A G T C A C G T C G T A A T C G A C G T A C G T
A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T

PH0008.1_Barx2/Jaspar

Match Rank:7
Score:0.64
Offset:-7
Orientation:reverse strand
Alignment:-------AATTACCTAG
NANAANTAATTANTTA-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T C A C G T A A C G T C A G T C T G A A T G C A G T C A C G T C G T A A T C G
G A C T C T G A G A C T G T C A T C G A A G T C G A C T G T C A G C T A C A G T C A G T C T G A T G A C A G C T C G A T C G T A A C G T

HOXA2/MA0900.1/Jaspar

Match Rank:8
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---AATTACCTAG
CCTAATTACC---
 A C G T A C G T A C G T G T C A C G T A A C G T C A G T C T G A A T G C A G T C A C G T C G T A A T C G
T A G C T A G C G A C T T G C A T C G A A C G T G A C T G C T A T A G C T A G C A C G T A C G T A C G T

PH0053.1_Hoxa6/Jaspar

Match Rank:9
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----AATTACCTAG-
AAGGTAATTACCTAAT
 A C G T A C G T A C G T A C G T A C G T G T C A C G T A A C G T C A G T C T G A A T G C A G T C A C G T C G T A A T C G A C G T
T C G A G T C A C T A G C A T G G A C T G T C A G C T A C A G T C A G T C T G A T G A C G A T C G A C T G T C A C G T A C A G T

ESRRB/MA0141.3/Jaspar

Match Rank:10
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:AATTACCTAG-
NATGACCTTGA
 G T C A C G T A A C G T C A G T C T G A A T G C A G T C A C G T C G T A A T C G A C G T
C G A T C G T A G A C T C T A G T C G A T A G C A G T C A G C T C G A T A T C G C T G A