Information for 3-GGGATTCGTC (Motif 8)

A T C G T A C G T A C G T C G A A C G T A G C T G A T C A T C G A C G T A T G C
Reverse Opposite:
T A C G T G C A T A G C C T A G T C G A T G C A A G C T A T G C A T G C T A G C
p-value:1e-10
log p-value:-2.311e+01
Information Content per bp:1.659
Number of Target Sequences with motif55.0
Percentage of Target Sequences with motif6.15%
Number of Background Sequences with motif1078.6
Percentage of Background Sequences with motif2.28%
Average Position of motif in Targets50.6 +/- 28.8bp
Average Position of motif in Background49.8 +/- 30.8bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0138.1_Pitx2/Jaspar

Match Rank:1
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----GGGATTCGTC---
TGAAGGGATTAATCATC
 A C G T A C G T A C G T A C G T A T C G T A C G T A C G T C G A A C G T A G C T G A T C A T C G A C G T A T G C A C G T A C G T A C G T
C A G T C A T G C G T A T C G A T C A G C T A G C A T G G T C A A G C T G A C T C G T A C T G A A G C T G A T C C T G A C G A T G A T C

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:2
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GGGATTCGTC-
GGGGATTCCCCC
 A C G T A T C G T A C G T A C G T C G A A C G T A G C T G A T C A T C G A C G T A T G C A C G T
A C T G C T A G C A T G T C A G G C T A G A C T A G C T A G T C A G T C G A T C G A T C A G T C

PITX3/MA0714.1/Jaspar

Match Rank:3
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:GGGATTCGTC
GGGATTANN-
 A T C G T A C G T A C G T C G A A C G T A G C T G A T C A T C G A C G T A T G C
C T A G T C A G C A T G G T C A A G C T G A C T C G T A C T G A A T C G A C G T

PH0130.1_Otx2/Jaspar

Match Rank:4
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----GGGATTCGTC---
TGTAGGGATTAATTGTC
 A C G T A C G T A C G T A C G T A T C G T A C G T A C G T C G A A C G T A G C T G A T C A T C G A C G T A T G C A C G T A C G T A C G T
C A G T C T A G C G A T T C G A T C A G T C A G C A T G G T C A C G A T C G A T C G T A C T G A A G C T G A C T C T A G C A G T G A T C

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:5
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GGGATTCGTC
NGGGATTA---
 A C G T A T C G T A C G T A C G T C G A A C G T A G C T G A T C A T C G A C G T A T G C
T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A A C G T A C G T A C G T

PH0015.1_Crx/Jaspar

Match Rank:6
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----GGGATTCGTC-
CGTTGGGGATTAGCCT
 A C G T A C G T A C G T A C G T A C G T A T C G T A C G T A C G T C G A A C G T A G C T G A T C A T C G A C G T A T G C A C G T
A G T C A C T G C G A T C G A T T A C G T A C G C T A G A C T G G T C A A C G T C G A T C G T A C T A G A G T C A T G C C A G T

NFKB1/MA0105.4/Jaspar

Match Rank:7
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GGGATTCGTC-
AGGGGAATCCCCT
 A C G T A C G T A T C G T A C G T A C G T C G A A C G T A G C T G A T C A T C G A C G T A T G C A C G T
T G C A C T A G A T C G C A T G C T A G T C G A C G T A A G C T G A T C G T A C G T A C G A T C A C G T

GSC/MA0648.1/Jaspar

Match Rank:8
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GGGATTCGTC
NNGGATTAGN-
 A C G T A T C G T A C G T A C G T C G A A C G T A G C T G A T C A T C G A C G T A T G C
C T A G T A C G T C A G T C A G T G C A A C G T G A C T C T G A C T A G A T G C A C G T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:9
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GGGATTCGTC
VRGGATTARN-
 A C G T A T C G T A C G T A C G T C G A A C G T A G C T G A T C A T C G A C G T A T G C
T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C A C G T

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:10
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GGGATTCGTC
RGGATTAR--
 A T C G T A C G T A C G T C G A A C G T A G C T G A T C A T C G A C G T A T G C
T C A G C T A G C T A G T G C A C G A T C G A T C G T A C T A G A C G T A C G T