Information for 1-GTTTAAAATGGCG (Motif 1)

C A T G A C G T A C G T A C G T C G T A C G T A C G T A C G T A A C G T A C T G A C T G A G T C C T A G
Reverse Opposite:
A G T C C T A G A G T C A G T C C G T A A C G T C G A T A C G T A C G T T C G A T C G A C G T A G T A C
p-value:1e-13
log p-value:-3.150e+01
Information Content per bp:1.834
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.78%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets41.7 +/- 23.1bp
Average Position of motif in Background25.5 +/- 0.6bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1/MA0095.2/Jaspar

Match Rank:1
Score:0.77
Offset:3
Orientation:forward strand
Alignment:GTTTAAAATGGCG--
---CAAGATGGCGGC
 C A T G A C G T A C G T A C G T C G T A C G T A C G T A C G T A A C G T A C T G A C T G A G T C C T A G A C G T A C G T
A C G T A C G T A C G T T G A C C T G A T C G A T C A G C G T A A G C T C T A G C T A G G T A C A C T G T C A G G T A C

YY2/MA0748.1/Jaspar

Match Rank:2
Score:0.74
Offset:5
Orientation:reverse strand
Alignment:GTTTAAAATGGCG---
-----TAATGGCGGNC
 C A T G A C G T A C G T A C G T C G T A C G T A C G T A C G T A A C G T A C T G A C T G A G T C C T A G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C A T C T G A C G T A G C A T C T A G A C T G A T G C T A C G C T A G G C T A G A T C

YY1(Zf)/Promoter/Homer

Match Rank:3
Score:0.73
Offset:3
Orientation:forward strand
Alignment:GTTTAAAATGGCG--
---CAAGATGGCGGC
 C A T G A C G T A C G T A C G T C G T A C G T A C G T A C G T A A C G T A C T G A C T G A G T C C T A G A C G T A C G T
A C G T A C G T A C G T T A G C C G T A C T G A T A C G C G T A A C G T A C T G A C T G A G T C T A C G C T A G G T A C

PB0132.1_Hbp1_2/Jaspar

Match Rank:4
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-GTTTAAAATGGCG---
NNTNNACAATGGGANNN
 A C G T C A T G A C G T A C G T A C G T C G T A C G T A C G T A C G T A A C G T A C T G A C T G A G T C C T A G A C G T A C G T A C G T
C G T A T A C G A G C T C G T A A G T C G T C A G T A C C G T A C G T A C G A T C T A G C T A G A C T G T C G A G T C A G A T C G C T A

E2F2/MA0864.1/Jaspar

Match Rank:5
Score:0.66
Offset:4
Orientation:forward strand
Alignment:GTTTAAAATGGCG-------
----AAAATGGCGCCATTTT
 C A T G A C G T A C G T A C G T C G T A C G T A C G T A C G T A A C G T A C T G A C T G A G T C C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A C G T A C G T A C G T A C G A T A T C G A C T G A G T C A C T G A G T C A T G C G C T A G C A T C G A T C G A T G C A T

E2F3/MA0469.2/Jaspar

Match Rank:6
Score:0.64
Offset:3
Orientation:forward strand
Alignment:GTTTAAAATGGCG--------
---AAAAATGGCGCCATTTTT
 C A T G A C G T A C G T A C G T C G T A C G T A C G T A C G T A A C G T A C T G A C T G A G T C C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T G A T C G A C G T A C G T A C G T A C A G T A T C G A T C G A G T C A T C G A G T C T A G C G T C A G C A T C G A T G C A T A G C T A G C T

LIN54/MA0619.1/Jaspar

Match Rank:7
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GTTTAAAATGGCG
NATTCAAAT-----
 A C G T C A T G A C G T A C G T A C G T C G T A C G T A C G T A C G T A A C G T A C T G A C T G A G T C C T A G
C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T A C G T A C G T A C G T A C G T A C G T

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GTTTAAAATGGCG
DCYAAAAATAGM-
 C A T G A C G T A C G T A C G T C G T A C G T A C G T A C G T A A C G T A C T G A C T G A G T C C T A G
C A T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G A C T C T G A T C A G G T A C A C G T

Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer

Match Rank:9
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GTTTAAAATGGCG
GCTAAAAATAGC-
 C A T G A C G T A C G T A C G T C G T A C G T A C G T A C G T A A C G T A C T G A C T G A G T C C T A G
A C T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G C A T C T G A T C A G G T A C A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:10
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:GTTTAAAATGGCG
---RACAAWGG--
 C A T G A C G T A C G T A C G T C G T A C G T A C G T A C G T A A C G T A C T G A C T G A G T C C T A G
A C G T A C G T A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T