Information for 15-KTSTRCGTSCCTG (Motif 27)

A C G T A C G T A T C G A C G T C T A G G T A C A C T G A C G T A T G C A G T C A G T C A C G T A C T G
Reverse Opposite:
A G T C C G T A A C T G A C T G A T C G C G T A A G T C A C T G A G T C C G T A A T G C C G T A T G C A
p-value:1e-8
log p-value:-1.861e+01
Information Content per bp:1.875
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.67%
Number of Background Sequences with motif7.5
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets49.3 +/- 27.3bp
Average Position of motif in Background49.0 +/- 21.6bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:1
Score:0.63
Offset:3
Orientation:forward strand
Alignment:KTSTRCGTSCCTG
---TACGTGCV--
 A C G T A C G T A T C G A C G T C T A G G T A C A C T G A C G T A T G C A G T C A G T C A C G T A C T G
A C G T A C G T A C G T A C G T C T G A G A T C A T C G G A C T T C A G G T A C T A G C A C G T A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:KTSTRCGTSCCTG
--NNACTTGCCTT
 A C G T A C G T A T C G A C G T C T A G G T A C A C T G A C G T A T G C A G T C A G T C A C G T A C T G
A C G T A C G T T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:3
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:KTSTRCGTSCCTG
--TTGCGTGCVA-
 A C G T A C G T A T C G A C G T C T A G G T A C A C T G A C G T A T G C A G T C A G T C A C G T A C T G
A C G T A C G T A C G T C A G T A C T G A G T C T C A G C G A T C A T G G T A C T A G C C G T A A C G T

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:4
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:KTSTRCGTSCCTG
GGGTACGTGC---
 A C G T A C G T A T C G A C G T C T A G G T A C A C T G A C G T A T G C A G T C A G T C A C G T A C T G
C T A G A T C G T C A G C A G T C T G A A T G C A C T G A G C T A C T G G T A C A C G T A C G T A C G T

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:5
Score:0.58
Offset:2
Orientation:forward strand
Alignment:KTSTRCGTSCCTG
--RTACGTGC---
 A C G T A C G T A T C G A C G T C T A G G T A C A C T G A C G T A T G C A G T C A G T C A C G T A C T G
A C G T A C G T C T G A C A G T C T G A A G T C C T A G G A C T A T C G G T A C A C G T A C G T A C G T

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:6
Score:0.58
Offset:2
Orientation:forward strand
Alignment:KTSTRCGTSCCTG
--GGACGTGC---
 A C G T A C G T A T C G A C G T C T A G G T A C A C T G A C G T A T G C A G T C A G T C A C G T A C T G
A C G T A C G T T A C G A C T G T C G A A G T C A C T G A C G T A C T G T A G C A C G T A C G T A C G T

Gmeb1/MA0615.1/Jaspar

Match Rank:7
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--KTSTRCGTSCCTG--
GAGTGTACGTAAGATGG
 A C G T A C G T A C G T A C G T A T C G A C G T C T A G G T A C A C T G A C G T A T G C A G T C A G T C A C G T A C T G A C G T A C G T
A T C G G T C A A C T G A C G T C A G T C A G T T C G A A G T C C T A G A G C T G T C A G T A C T A C G C G T A A G C T T C A G A T C G

PB0027.1_Gmeb1_1/Jaspar

Match Rank:8
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--KTSTRCGTSCCTG--
GAGTGTACGTAAGATGG
 A C G T A C G T A C G T A C G T A T C G A C G T C T A G G T A C A C T G A C G T A T G C A G T C A G T C A C G T A C T G A C G T A C G T
A T C G G T C A A C T G A C G T C A G T C A G T T C G A A G T C C T A G A G C T G T C A G T A C T A C G C G T A A G C T T C A G A T C G

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:9
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:KTSTRCGTSCCTG-
----CTGTTCCTGG
 A C G T A C G T A T C G A C G T C T A G G T A C A C T G A C G T A T G C A G T C A G T C A C G T A C T G A C G T
A C G T A C G T A C G T A C G T T A G C C G A T A T C G A C G T A C G T A G T C A G T C G C A T C A T G A T C G

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:10
Score:0.54
Offset:3
Orientation:forward strand
Alignment:KTSTRCGTSCCTG
---TGCGTG----
 A C G T A C G T A T C G A C G T C T A G G T A C A C T G A C G T A T G C A G T C A G T C A C G T A C T G
A C G T A C G T A C G T G A C T A C T G A G T C A C T G A C G T A C T G A C G T A C G T A C G T A C G T