Information for 12-AGAGGCAAAAGGT (Motif 10)

C G T A T A C G C G T A A C T G C T A G T A G C G C T A C T G A T G C A C T G A A C T G A C T G A G C T
Reverse Opposite:
T C G A T A G C G T A C A G C T A C G T A G C T C A G T A T C G G A T C A G T C A C G T A G T C C G A T
p-value:1e-9
log p-value:-2.208e+01
Information Content per bp:1.755
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif1.98%
Number of Background Sequences with motif132.3
Percentage of Background Sequences with motif0.28%
Average Position of motif in Targets51.1 +/- 28.5bp
Average Position of motif in Background53.2 +/- 28.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rarb/MA0857.1/Jaspar

Match Rank:1
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-AGAGGCAAAAGGT--
AAAGGTCAAAAGGTCA
 A C G T C G T A T A C G C G T A A C T G C T A G T A G C G C T A C T G A T G C A C T G A A C T G A C T G A G C T A C G T A C G T
G C T A C T G A T C G A A C T G A C T G C A G T A T G C C T G A G C T A C T G A C T G A C T A G A C T G A G C T A G T C C T G A

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:2
Score:0.64
Offset:1
Orientation:forward strand
Alignment:AGAGGCAAAAGGT--
-TAGGGCAAAGGTCA
 C G T A T A C G C G T A A C T G C T A G T A G C G C T A C T G A T G C A C T G A A C T G A C T G A G C T A C G T A C G T
A C G T A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A

Rarg/MA0859.1/Jaspar

Match Rank:3
Score:0.64
Offset:0
Orientation:forward strand
Alignment:AGAGGCAAAAGGT---
AAGGTCAAAAGGTCAA
 C G T A T A C G C G T A A C T G C T A G T A G C G C T A C T G A T G C A C T G A A C T G A C T G A G C T A C G T A C G T A C G T
T C G A T C G A C T A G A C T G A C G T A G T C T C G A C G T A C T G A T C G A A C T G A C T G A C G T A G T C T C G A G C T A

HNF4G/MA0484.1/Jaspar

Match Rank:4
Score:0.63
Offset:0
Orientation:forward strand
Alignment:AGAGGCAAAAGGT--
AGAGTCCAAAGTCCA
 C G T A T A C G C G T A A C T G C T A G T A G C G C T A C T G A T G C A C T G A A C T G A C T G A G C T A C G T A C G T
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A

NR1H2::RXRA/MA0115.1/Jaspar

Match Rank:5
Score:0.63
Offset:0
Orientation:forward strand
Alignment:AGAGGCAAAAGGT----
AAAGGTCAAAGGTCAAC
 C G T A T A C G C G T A A C T G C T A G T A G C G C T A C T G A T G C A C T G A A C T G A C T G A G C T A C G T A C G T A C G T A C G T
G T C A C T G A C T G A A C T G A C T G A C G T A G T C C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A C G T A A T G C

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:6
Score:0.63
Offset:1
Orientation:forward strand
Alignment:AGAGGCAAAAGGT--
-GAGGTCAAAGGTCA
 C G T A T A C G C G T A A C T G C T A G T A G C G C T A C T G A T G C A C T G A A C T G A C T G A G C T A C G T A C G T
A C G T T C A G C T G A C T A G C A T G A C G T A T G C C T G A C T G A C T G A C T A G C A T G A C G T A T G C C T G A

Nr2f6/MA0677.1/Jaspar

Match Rank:7
Score:0.62
Offset:1
Orientation:forward strand
Alignment:AGAGGCAAAAGGT--
-GAGGTCAAAGGTCA
 C G T A T A C G C G T A A C T G C T A G T A G C G C T A C T G A T G C A C T G A A C T G A C T G A G C T A C G T A C G T
A C G T T C A G T C G A C A T G C A T G A C G T A G T C C G T A C T G A T C G A A C T G C A T G A C G T A G T C C T G A

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:8
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-AGAGGCAAAAGGT--
CANAGNNCAAAGTCCA
 A C G T C G T A T A C G C G T A A C T G C T A G T A G C G C T A C T G A T G C A C T G A A C T G A C T G A G C T A C G T A C G T
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A

Tcf7/MA0769.1/Jaspar

Match Rank:9
Score:0.61
Offset:0
Orientation:forward strand
Alignment:AGAGGCAAAAGGT
AAAGATCAAAGG-
 C G T A T A C G C G T A A C T G C T A G T A G C G C T A C T G A T G C A C T G A A C T G A C T G A G C T
C T G A C T G A C G T A A T C G C G T A A C G T A T G C C G T A T C G A C G T A C T A G T C A G A C G T

Sox3/MA0514.1/Jaspar

Match Rank:10
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:AGAGGCAAAAGGT
-AAAACAAAGG--
 C G T A T A C G C G T A A C T G C T A G T A G C G C T A C T G A T G C A C T G A A C T G A C T G A G C T
A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T