Information for 6-CCGCCGCGGGTCGCCG (Motif 12)

A G T C A G T C A C T G A G T C A G T C C T A G A T G C A C T G A T C G A T C G A G C T A T G C A C T G A G T C A G T C A C T G
Reverse Opposite:
A G T C C T A G A C T G A G T C A T C G C T G A A T G C A T G C A G T C A T C G A G T C A C T G A C T G A G T C C T A G A C T G
p-value:1e-9
log p-value:-2.162e+01
Information Content per bp:1.867
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.75%
Number of Background Sequences with motif8.1
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets59.1 +/- 21.6bp
Average Position of motif in Background39.4 +/- 19.8bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:0.58
Offset:2
Orientation:forward strand
Alignment:CCGCCGCGGGTCGCCG-
--GTCATGCHTGRCTGS
 A G T C A G T C A C T G A G T C A G T C C T A G A T G C A C T G A T C G A T C G A G C T A T G C A C T G A G T C A G T C A C T G A C G T
A C G T A C G T A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

PB0199.1_Zfp161_2/Jaspar

Match Rank:2
Score:0.56
Offset:2
Orientation:forward strand
Alignment:CCGCCGCGGGTCGCCG
--GCCGCGCAGTGCGT
 A G T C A G T C A C T G A G T C A G T C C T A G A T G C A C T G A T C G A T C G A G C T A T G C A C T G A G T C A G T C A C T G
A C G T A C G T C A T G G A T C A G T C T A C G G A T C C T A G T G A C G T C A C T A G A C G T C T A G G T A C T C A G A G C T

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CCGCCGCGGGTCGCCG-
-NGTCACGCTTGGCTGC
 A G T C A G T C A C T G A G T C A G T C C T A G A T G C A C T G A T C G A T C G A G C T A T G C A C T G A G T C A G T C A C T G A C G T
A C G T C T A G A C T G A G C T A G T C G T C A G A T C T C A G A T G C G C A T G A C T A T C G T C A G T A G C G A C T C T A G T G A C

PAX5/MA0014.2/Jaspar

Match Rank:4
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:CCGCCGCGGGTCGCCG-----
--GTCACGCTTGGCTGCNCNN
 A G T C A G T C A C T G A G T C A G T C C T A G A T G C A C T G A T C G A T C G A G C T A T G C A C T G A G T C A G T C A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C A T G G A C T A G T C G T C A G A T C T C A G T A G C G A C T A G C T A T C G T C A G A T G C G A C T C T A G T G A C G A T C A G T C G C A T A G T C

ZIC4/MA0751.1/Jaspar

Match Rank:5
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:CCGCCGCGGGTCGCCG
NCNCAGCGGGGGGTC-
 A G T C A G T C A C T G A G T C A G T C C T A G A T G C A C T G A T C G A T C G A G C T A T G C A C T G A G T C A G T C A C T G
C A T G T G A C C T G A G A T C G T C A T C A G G A T C C T A G C A T G C A T G C A T G C A T G C A T G A G C T T G A C A C G T

ZIC3/MA0697.1/Jaspar

Match Rank:6
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:CCGCCGCGGGTCGCCG
NCGCAGCGGGGGGTC-
 A G T C A G T C A C T G A G T C A G T C C T A G A T G C A C T G A T C G A T C G A G C T A T G C A C T G A G T C A G T C A C T G
C A T G G T A C C T A G G A T C T G C A T C A G A G T C C T A G A C T G A C T G C A T G C A T G C A T G A G C T T G A C A C G T

Hes1/MA1099.1/Jaspar

Match Rank:7
Score:0.51
Offset:2
Orientation:forward strand
Alignment:CCGCCGCGGGTCGCCG
--GGCACGCGTC----
 A G T C A G T C A C T G A G T C A G T C C T A G A T G C A C T G A T C G A T C G A G C T A T G C A C T G A G T C A G T C A C T G
A C G T A C G T T A C G T A C G G A T C C T G A A G T C T C A G G A T C A C T G G A C T G T A C A C G T A C G T A C G T A C G T

Creb3l2/MA0608.1/Jaspar

Match Rank:8
Score:0.51
Offset:2
Orientation:forward strand
Alignment:CCGCCGCGGGTCGCCG
--GCCACGTGT-----
 A G T C A G T C A C T G A G T C A G T C C T A G A T G C A C T G A T C G A T C G A G C T A T G C A C T G A G T C A G T C A C T G
A C G T A C G T A C T G G T A C A T G C C G T A A G T C A C T G A C G T A T C G C A G T A C G T A C G T A C G T A C G T A C G T

ZIC1/MA0696.1/Jaspar

Match Rank:9
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:CCGCCGCGGGTCGCCG
-CACAGCGGGGGGTC-
 A G T C A G T C A C T G A G T C A G T C C T A G A T G C A C T G A T C G A T C G A G C T A T G C A C T G A G T C A G T C A C T G
A C G T T G A C C T G A A G T C T G C A T C A G A G T C C T A G C A T G T C A G C A T G C A T G C A T G A G C T T G A C A C G T

PAX9/MA0781.1/Jaspar

Match Rank:10
Score:0.50
Offset:1
Orientation:forward strand
Alignment:CCGCCGCGGGTCGCCG--
-CGTCACGCATGACTGCA
 A G T C A G T C A C T G A G T C A G T C C T A G A T G C A C T G A T C G A T C G A G C T A T G C A C T G A G T C A G T C A C T G A C G T A C G T
A C G T A T G C A C T G G C A T A G T C T G C A A G T C A C T G A T G C G C T A G A C T A T C G C T G A T A G C G A C T C A T G T G A C G T C A