Information for 5-TCGACTTTTCGCC (Motif 6)

C A G T A G T C A C T G G T C A A G T C C G A T A G C T A G C T A C G T A G T C A C T G G T A C A G T C
Reverse Opposite:
A C T G A C T G G T A C A C T G G T C A C T G A C T G A C G T A A C T G A C G T A G T C A C T G G C T A
p-value:1e-12
log p-value:-2.879e+01
Information Content per bp:1.807
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.11%
Number of Background Sequences with motif4.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets37.3 +/- 18.4bp
Average Position of motif in Background68.1 +/- 12.5bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr2e1/MA0676.1/Jaspar

Match Rank:1
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:TCGACTTTTCGCC
TTGACTTTT----
 C A G T A G T C A C T G G T C A A G T C C G A T A G C T A G C T A C G T A G T C A C T G G T A C A G T C
C G A T A C G T T C A G C T G A G A T C G A C T G A C T G A C T C G A T A C G T A C G T A C G T A C G T

PB0136.1_IRC900814_2/Jaspar

Match Rank:2
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----TCGACTTTTCGCC
TTTTACGACTTTCCAT-
 A C G T A C G T A C G T A C G T C A G T A G T C A C T G G T C A A G T C C G A T A G C T A G C T A C G T A G T C A C T G G T A C A G T C
C G A T A G C T G C A T A G C T T C G A G A T C C T A G C T G A G T A C C A G T A G C T G A C T G A T C T G A C T C G A G A C T A C G T

PB0134.1_Hnf4a_2/Jaspar

Match Rank:3
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----TCGACTTTTCGCC
NNATTGGACTTTNGNN-
 A C G T A C G T A C G T A C G T C A G T A G T C A C T G G T C A A G T C C G A T A G C T A G C T A C G T A G T C A C T G G T A C A G T C
C G A T C A G T G C T A C A G T G A C T C T A G C A T G G T C A G T A C A G C T G A C T G C A T C A G T C T A G T G A C T G A C A C G T

Hnf4a/MA0114.3/Jaspar

Match Rank:4
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--TCGACTTTTCGCC-
ATTGGACTTTGACCCC
 A C G T A C G T C A G T A G T C A C T G G T C A A G T C C G A T A G C T A G C T A C G T A G T C A C T G G T A C A G T C A C G T
C T G A A G C T G A C T T C A G T C A G T G C A T G A C A G C T G A C T A G C T T C A G G T C A G T A C G A T C A G T C A G T C

Nr2f6/MA0677.1/Jaspar

Match Rank:5
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:TCGACTTTTCGCC--
-TGACCTTTGACCTN
 C A G T A G T C A C T G G T C A A G T C C G A T A G C T A G C T A C G T A G T C A C T G G T A C A G T C A C G T A C G T
A C G T A G C T T C A G T G C A G T A C G T A C A G C T G A C T G A C T T C A G T G C A G T A C G T A C A G C T A G T C

NR1H2::RXRA/MA0115.1/Jaspar

Match Rank:6
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-TCGACTTTTCGCC---
GTTGACCTTTGACCTTT
 A C G T C A G T A G T C A C T G G T C A A G T C C G A T A G C T A G C T A C G T A G T C A C T G G T A C A G T C A C G T A C G T A C G T
T A C G G A C T A C G T A C T G C G T A A G T C A G T C A C G T C G A T A C G T A C T G C G T A G T A C A G T C A G C T G A C T C A G T

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:7
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:TCGACTTTTCGCC---
-TGACCTTTGCCCTAN
 C A G T A G T C A C T G G T C A A G T C C G A T A G C T A G C T A C G T A G T C A C T G G T A C A G T C A C G T A C G T A C G T
A C G T C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G A T C G A C T T C G A T A G C

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:8
Score:0.55
Offset:1
Orientation:forward strand
Alignment:TCGACTTTTCGCC--
-TGACCTTTGCCCCA
 C A G T A G T C A C T G G T C A A G T C C G A T A G C T A G C T A C G T A G T C A C T G G T A C A G T C A C G T A C G T
A C G T C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G T A C G A T C G T C A

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:9
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:TCGACTTTTCGCC--
-TGACCTTTGCCCTA
 C A G T A G T C A C T G G T C A A G T C C G A T A G C T A G C T A C G T A G T C A C T G G T A C A G T C A C G T A C G T
A C G T A G C T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G T G A C G A T C G A T C G A C T T C G A

Rxra/MA0512.2/Jaspar

Match Rank:10
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:TCGACTTTTCGCC--
-TGACCTTTGACCCC
 C A G T A G T C A C T G G T C A A G T C C G A T A G C T A G C T A C G T A G T C A C T G G T A C A G T C A C G T A C G T
A C G T A G C T T C A G T G C A T G A C T A G C A G C T G A C T A G C T T C A G T G C A G T A C G T A C A G T C A G T C