Information for 10-TGGCAAATCC (Motif 36)

A G C T A T C G A C T G T A G C C G T A C T G A C G T A A C G T A G T C A T G C
Reverse Opposite:
A T C G A C T G G T C A A C G T A G C T A C G T A T C G G T A C A T G C C T G A
p-value:1e-6
log p-value:-1.464e+01
Information Content per bp:1.780
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif3.16%
Number of Background Sequences with motif367.8
Percentage of Background Sequences with motif0.81%
Average Position of motif in Targets43.6 +/- 31.4bp
Average Position of motif in Background52.0 +/- 30.5bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Gfi1/MA0038.1/Jaspar

Match Rank:1
Score:0.66
Offset:3
Orientation:forward strand
Alignment:TGGCAAATCC---
---CAAATCACTG
 A G C T A T C G A C T G T A G C C G T A C T G A C G T A A C G T A G T C A T G C A C G T A C G T A C G T
A C G T A C G T A C G T A G T C T G C A C G T A C G T A C A G T G T A C G C T A T A G C G C A T T A C G

RELA/MA0107.1/Jaspar

Match Rank:2
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:TGGCAAATCC-
-GGAAATTCCC
 A G C T A T C G A C T G T A G C C G T A C T G A C G T A A C G T A G T C A T G C A C G T
A C G T A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C

NFAT5/MA0606.1/Jaspar

Match Rank:3
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--TGGCAAATCC
NATGGAAAAN--
 A C G T A C G T A G C T A T C G A C T G T A G C C G T A C T G A C G T A A C G T A G T C A T G C
G C T A C T G A C G A T T C A G C T A G C G T A C G T A C G T A C G T A A C G T A C G T A C G T

RHOXF1/MA0719.1/Jaspar

Match Rank:4
Score:0.64
Offset:3
Orientation:forward strand
Alignment:TGGCAAATCC-
---ATAATCCC
 A G C T A T C G A C T G T A G C C G T A C T G A C G T A A C G T A G T C A T G C A C G T
A C G T A C G T A C G T G C T A C G A T C T G A C G T A A C G T A G T C A G T C G T A C

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:5
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:TGGCAAATCC---
-GGGAAATCCCCN
 A G C T A T C G A C T G T A G C C G T A C T G A C G T A A C G T A G T C A T G C A C G T A C G T A C G T
A C G T C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T

MF0003.1_REL_class/Jaspar

Match Rank:6
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:TGGCAAATCC-
-GGAAATCCCC
 A G C T A T C G A C T G T A G C C G T A C T G A C G T A A C G T A G T C A T G C A C G T
A C G T C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:7
Score:0.63
Offset:2
Orientation:forward strand
Alignment:TGGCAAATCC
--GCTAATCC
 A G C T A T C G A C T G T A G C C G T A C T G A C G T A A C G T A G T C A T G C
A C G T A C G T A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C

PH0015.1_Crx/Jaspar

Match Rank:8
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TGGCAAATCC------
AGGCTAATCCCCAANG
 A G C T A T C G A C T G T A G C C G T A C T G A C G T A A C G T A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T
G T C A T A C G T C A G G A T C C G A T C G T A C G T A A C G T A G T C A G T C A T G C A T G C G C T A G C T A T G A C T C A G

NFATC2/MA0152.1/Jaspar

Match Rank:9
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TGGCAAATCC
TGGAAAA---
 A G C T A T C G A C T G T A G C C G T A C T G A C G T A A C G T A G T C A T G C
C G A T A C T G A C T G C G T A C G T A T C G A G C T A A C G T A C G T A C G T

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:10
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--TGGCAAATCC
AATGGAAAAT--
 A C G T A C G T A G C T A T C G A C T G T A G C C G T A C T G A C G T A A C G T A G T C A T G C
T C G A T C G A A G C T A C T G A C T G C G T A C G T A G T C A T G C A G C A T A C G T A C G T