Information for 18-ARATGTTAATRCA (Motif 33)

C G T A T C A G C G T A C G A T C A T G A C G T A C G T G T C A C G T A C G A T C T A G G T A C C G T A
Reverse Opposite:
G C A T A C T G A G T C C G T A A C G T A C G T G T C A C G T A G T A C C G T A C G A T A G T C A C G T
p-value:1e-8
log p-value:-1.842e+01
Information Content per bp:1.727
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif3.00%
Number of Background Sequences with motif260.3
Percentage of Background Sequences with motif0.58%
Average Position of motif in Targets44.4 +/- 22.1bp
Average Position of motif in Background47.2 +/- 30.5bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arid3b/MA0601.1/Jaspar

Match Rank:1
Score:0.68
Offset:2
Orientation:forward strand
Alignment:ARATGTTAATRCA
--ATATTAATTAA
 C G T A T C A G C G T A C G A T C A T G A C G T A C G T G T C A C G T A C G A T C T A G G T A C C G T A
A C G T A C G T C G T A C G A T G C T A C G A T A C G T C G T A C G T A C G A T G C A T C G T A C G T A

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.67
Offset:1
Orientation:forward strand
Alignment:ARATGTTAATRCA
-TATGCWAATBAV
 C G T A T C A G C G T A C G A T C A T G A C G T A C G T G T C A C G T A C G A T C T A G G T A C C G T A
A C G T G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:3
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:ARATGTTAATRCA
AGGTGTTAAT---
 C G T A T C A G C G T A C G A T C A T G A C G T A C G T G T C A C G T A C G A T C T A G G T A C C G T A
C T G A C T A G A T C G C G A T C T A G G C A T A C G T C T G A C T G A C G A T A C G T A C G T A C G T

PB0174.1_Sox30_2/Jaspar

Match Rank:4
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--ARATGTTAATRCA-
TAAGATTATAATACGG
 A C G T A C G T C G T A T C A G C G T A C G A T C A T G A C G T A C G T G T C A C G T A C G A T C T A G G T A C C G T A A C G T
G A C T G T C A C G T A A C T G G T C A C G A T A G C T G T C A A C G T T C G A C G T A C A G T T G C A T A G C T A C G T A C G

PB0079.1_Sry_1/Jaspar

Match Rank:5
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--ARATGTTAATRCA-
NANTATTATAATTNNN
 A C G T A C G T C G T A T C A G C G T A C G A T C A T G A C G T A C G T G T C A C G T A C G A T C T A G G T A C C G T A A C G T
A C T G G C T A G C T A G A C T C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C G A T G T C A C G A T T G C A

PH0035.1_Gsc/Jaspar

Match Rank:6
Score:0.64
Offset:0
Orientation:forward strand
Alignment:ARATGTTAATRCA----
AATCGTTAATCCCTTTA
 C G T A T C A G C G T A C G A T C A T G A C G T A C G T G T C A C G T A C G A T C T A G G T A C C G T A A C G T A C G T A C G T A C G T
G C T A T C G A G C A T G T A C T C A G G A C T C G A T C T G A C G T A A C G T G A T C A G T C A T G C A G C T C A G T G C A T T G A C

POU5F1B/MA0792.1/Jaspar

Match Rank:7
Score:0.63
Offset:1
Orientation:forward strand
Alignment:ARATGTTAATRCA
-TATGCAAAT---
 C G T A T C A G C G T A C G A T C A T G A C G T A C G T G T C A C G T A C G A T C T A G G T A C C G T A
A C G T G A C T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T A C G T A C G T A C G T

POU3F1/MA0786.1/Jaspar

Match Rank:8
Score:0.63
Offset:0
Orientation:forward strand
Alignment:ARATGTTAATRCA
TTATGCAAATTA-
 C G T A T C A G C G T A C G A T C A T G A C G T A C G T G T C A C G T A C G A T C T A G G T A C C G T A
C G A T G C A T C T G A G A C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A A C G T

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:9
Score:0.63
Offset:1
Orientation:forward strand
Alignment:ARATGTTAATRCA
-WATGCAAATGAG
 C G T A T C A G C G T A C G A T C A T G A C G T A C G T G T C A C G T A C G A T C T A G G T A C C G T A
A C G T G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G

Pitx1/MA0682.1/Jaspar

Match Rank:10
Score:0.62
Offset:5
Orientation:forward strand
Alignment:ARATGTTAATRCA
-----TTAATCCC
 C G T A T C A G C G T A C G A T C A T G A C G T A C G T G T C A C G T A C G A T C T A G G T A C C G T A
A C G T A C G T A C G T A C G T A C G T G A C T G C A T T C G A C G T A C A G T G A T C G A T C G T A C