Information for 12-GACAAAGGGCGAT (Motif 24)

A C T G G T C A A G T C C G T A C G T A C G T A A C T G A C T G A C T G A G T C A C T G C G T A A C G T
Reverse Opposite:
C G T A G C A T A G T C C T A G A G T C A G T C G T A C A C G T A C G T A C G T C T A G A C G T A G T C
p-value:1e-8
log p-value:-2.069e+01
Information Content per bp:1.911
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.79%
Number of Background Sequences with motif3.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets33.4 +/- 16.1bp
Average Position of motif in Background33.4 +/- 11.6bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox2/MA0143.3/Jaspar

Match Rank:1
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:GACAAAGGGCGAT
AACAAAGG-----
 A C T G G T C A A G T C C G T A C G T A C G T A A C T G A C T G A C T G A G T C A C T G C G T A A C G T
T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:2
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:GACAAAGGGCGAT
RACAAWGG-----
 A C T G G T C A A G T C C G T A C G T A C G T A A C T G A C T G A C T G A G T C A C T G C G T A A C G T
T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:3
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--GACAAAGGGCGAT
AAAACAAAGG-----
 A C G T A C G T A C T G G T C A A G T C C G T A C G T A C G T A A C T G A C T G A C T G A G T C A C T G C G T A A C G T
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:4
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:GACAAAGGGCGAT
-ACAAAGGNBCCT
 A C T G G T C A A G T C C G T A C G T A C G T A A C T G A C T G A C T G A G T C A C T G C G T A A C G T
A C G T G C T A T A G C C G T A T C G A C G T A T C A G T A C G T C A G A G T C A G T C G A T C G C A T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:5
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--GACAAAGGGCGAT
VRRACAAWGG-----
 A C G T A C G T A C T G G T C A A G T C C G T A C G T A C G T A A C T G A C T G A C T G A G T C A C T G C G T A A C G T
T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:6
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--GACAAAGGGCGAT
GGAACAAAGR-----
 A C G T A C G T A C T G G T C A A G T C C G T A C G T A C G T A A C T G A C T G A C T G A G T C A C T G C G T A A C G T
T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T A C G T A C G T A C G T A C G T

PB0191.1_Tcfap2c_2/Jaspar

Match Rank:7
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GACAAAGGGCGAT
CCGCCCAAGGGCAG-
 A C G T A C G T A C T G G T C A A G T C C G T A C G T A C G T A A C T G A C T G A C T G A G T C A C T G C G T A A C G T
A T G C G A T C T C A G G T A C G A T C G A T C C G T A G C T A C T A G C T A G C A T G A G T C C G T A C T A G A C G T

Sox6/MA0515.1/Jaspar

Match Rank:8
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--GACAAAGGGCGAT
AAAACAATGG-----
 A C G T A C G T A C T G G T C A A G T C C G T A C G T A C G T A A C T G A C T G A C T G A G T C A C T G C G T A A C G T
T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G A C G T A C G T A C G T A C G T A C G T

SOX10/MA0442.1/Jaspar

Match Rank:9
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GACAAAGGGCGAT
-ACAAAG------
 A C T G G T C A A G T C C G T A C G T A C G T A A C T G A C T G A C T G A G T C A C T G C G T A A C G T
A C G T G T C A A T G C C G T A T G C A C G T A C T A G A C G T A C G T A C G T A C G T A C G T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GACAAAGGGCGAT
GAACAATGGN----
 A C G T A C T G G T C A A G T C C G T A C G T A C G T A A C T G A C T G A C T G A G T C A C T G C G T A A C G T
C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T A C G T A C G T A C G T