Information for 4-GCAVGTGCTGCTCTGC (Motif 8)

A C T G A T G C G T C A T G C A T A C G C A G T T A C G G A T C C G A T A C T G A T G C C A G T A T G C A G C T C T A G A T G C
Reverse Opposite:
A T C G A G T C C T G A T A C G G C T A A T C G A G T C G C T A C A T G A T G C G T C A A T G C A C G T C A G T T A C G G T A C
p-value:1e-10
log p-value:-2.373e+01
Information Content per bp:1.661
Number of Target Sequences with motif25.0
Percentage of Target Sequences with motif2.86%
Number of Background Sequences with motif251.5
Percentage of Background Sequences with motif0.55%
Average Position of motif in Targets58.3 +/- 24.1bp
Average Position of motif in Background52.7 +/- 28.4bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0207.1_Zic3_2/Jaspar

Match Rank:1
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:GCAVGTGCTGCTCTGC--
---NNTCCTGCTGTGNNN
 A C T G A T G C G T C A T G C A T A C G C A G T T A C G G A T C C G A T A C T G A T G C C A G T A T G C A G C T C T A G A T G C A C G T A C G T
A C G T A C G T A C G T G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

POL013.1_MED-1/Jaspar

Match Rank:2
Score:0.57
Offset:9
Orientation:forward strand
Alignment:GCAVGTGCTGCTCTGC
---------GCTCCG-
 A C T G A T G C G T C A T G C A T A C G C A G T T A C G G A T C C G A T A C T G A T G C C A G T A T G C A G C T C T A G A T G C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T A G T C A G T C A T C G A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:3
Score:0.56
Offset:8
Orientation:reverse strand
Alignment:GCAVGTGCTGCTCTGC
--------NGCTN---
 A C T G A T G C G T C A T G C A T A C G C A G T T A C G G A T C C G A T A C T G A T G C C A G T A T G C A G C T C T A G A T G C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:4
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:GCAVGTGCTGCTCTGC--
---TNTCCTGCTGTGNNG
 A C T G A T G C G T C A T G C A T A C G C A G T T A C G G A T C C G A T A C T G A T G C C A G T A T G C A G C T C T A G A T G C A C G T A C G T
A C G T A C G T A C G T G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:GCAVGTGCTGCTCTGC
---CCCCCTGCTGTG-
 A C T G A T G C G T C A T G C A T A C G C A G T T A C G G A T C C G A T A C T G A T G C C A G T A T G C A G C T C T A G A T G C
A C G T A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T

NHLH1/MA0048.2/Jaspar

Match Rank:6
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:GCAVGTGCTGCTCTGC
-----CGCAGCTGCG-
 A C T G A T G C G T C A T G C A T A C G C A G T T A C G G A T C C G A T A C T G A T G C C A G T A T G C A G C T C T A G A T G C
A C G T A C G T A C G T A C G T A C G T T G A C C T A G A T G C T C G A A T C G T A G C A C G T A C T G A G T C A C T G A C G T

PB0003.1_Ascl2_1/Jaspar

Match Rank:7
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----GCAVGTGCTGCTCTGC
CTCAGCAGCTGCTACTG---
 A C G T A C G T A C G T A C G T A C T G A T G C G T C A T G C A T A C G C A G T T A C G G A T C C G A T A C T G A T G C C A G T A T G C A G C T C T A G A T G C
A G T C A C G T A G T C T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T G A C G A T C G C A T C A T G A C G T A C G T A C G T

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:8
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--GCAVGTGCTGCTCTGC
SDGCAGGTGCNS------
 A C G T A C G T A C T G A T G C G T C A T G C A T A C G C A G T T A C G G A T C C G A T A C T G A T G C C A G T A T G C A G C T C T A G A T G C
A T C G C T A G C T A G A G T C C G T A A C T G A C T G A C G T A C T G A T G C G A T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T

Tcf12/MA0521.1/Jaspar

Match Rank:9
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:GCAVGTGCTGCTCTGC
----NNGCAGCTGTT-
 A C T G A T G C G T C A T G C A T A C G C A G T T A C G G A T C C G A T A C T G A T G C C A G T A T G C A G C T C T A G A T G C
A C G T A C G T A C G T A C G T A T G C G C A T A T C G A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G C T A C G T

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:GCAVGTGCTGCTCTGC
----CAGCAGCTGN--
 A C T G A T G C G T C A T G C A T A C G C A G T T A C G G A T C C G A T A C T G A T G C C A G T A T G C A G C T C T A G A T G C
A C G T A C G T A C G T A C G T T G A C T C G A T C A G A G T C C G T A A T C G A T G C A C G T A C T G A G C T A C G T A C G T