Information for 5-AACTCAGGCGAGA (Motif 5)

C G T A C G T A A G T C A G C T A G T C C G T A A C T G A C T G G T A C A C T G G C T A A C T G T G C A
Reverse Opposite:
A C G T A G T C C G A T A G T C A C T G A G T C G T A C A C G T A C T G T C G A A C T G A C G T A C G T
p-value:1e-11
log p-value:-2.701e+01
Information Content per bp:1.861
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.85%
Number of Background Sequences with motif4.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets38.7 +/- 21.7bp
Average Position of motif in Background67.4 +/- 19.2bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax6/MA0069.1/Jaspar

Match Rank:1
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:AACTCAGGCGAGA-
AANTCATGCGTGAA
 C G T A C G T A A G T C A G C T A G T C C G T A A C T G A C T G G T A C A C T G G C T A A C T G T G C A A C G T
G T C A T C G A A G T C G A C T A T G C C T G A C G A T A T C G G A T C C T A G A C G T C T A G C G T A T C G A

PAX1/MA0779.1/Jaspar

Match Rank:2
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--AACTCAGGCGAGA--
NGCANTCATGCGTGACG
 A C G T A C G T C G T A C G T A A G T C A G C T A G T C C G T A A C T G A C T G G T A C A C T G G C T A A C T G T G C A A C G T A C G T
C A G T A C T G G T A C C T G A A T C G A G C T T A G C C T G A C G A T A T C G G A T C C T A G A C G T C T A G C G T A G T A C T A C G

PAX9/MA0781.1/Jaspar

Match Rank:3
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--AACTCAGGCGAGA--
TGCAGTCATGCGTGACG
 A C G T A C G T C G T A C G T A A G T C A G C T A G T C C G T A A C T G A C T G G T A C A C T G G C T A A C T G T G C A A C G T A C G T
C A G T A C T G G T A C C T G A A T C G A G C T A T G C C T G A C G A T A T C G A G T C C T A G A C G T C T A G C G T A G T A C T A C G

ZEB1/MA0103.2/Jaspar

Match Rank:4
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:AACTCAGGCGAGA
----CAGGTGAGG
 C G T A C G T A A G T C A G C T A G T C C G T A A C T G A C T G G T A C A C T G G C T A A C T G T G C A
A C G T A C G T A C G T A C G T A G T C C G T A A C T G A C T G A C G T C T A G G C T A C T A G A C T G

ZBTB33/MA0527.1/Jaspar

Match Rank:5
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-AACTCAGGCGAGA-
NAGNTCTCGCGAGAN
 A C G T C G T A C G T A A G T C A G C T A G T C C G T A A C T G A C T G G T A C A C T G G C T A A C T G T G C A A C G T
T A G C T C G A T C A G T C G A A G C T T G A C A G C T A G T C C T A G G A T C A C T G C T G A A C T G T C G A T C A G

GFX(?)/Promoter/Homer

Match Rank:6
Score:0.58
Offset:1
Orientation:forward strand
Alignment:AACTCAGGCGAGA
-ATTCTCGCGAGA
 C G T A C G T A A G T C A G C T A G T C C G T A A C T G A C T G G T A C A C T G G C T A A C T G T G C A
A C G T T C G A G A C T A G C T T G A C A G C T G T A C T C A G G A T C A T C G T G C A A C T G C T G A

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:7
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-AACTCAGGCGAGA-
SCAGYCADGCATGAC
 A C G T C G T A C G T A A G T C A G C T A G T C C G T A A C T G A C T G G T A C A C T G G C T A A C T G T G C A A C G T
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer

Match Rank:8
Score:0.55
Offset:-6
Orientation:forward strand
Alignment:------AACTCAGGCGAGA-
NGTGTTCAVTSAAGCGKAAA
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A G T C A G C T A G T C C G T A A C T G A C T G G T A C A C T G G C T A A C T G T G C A A C G T
A G C T T A C G C G A T T C A G A G C T A C G T G A T C C T G A T A G C A G C T A T G C C T G A C G T A A T C G A G T C C T A G A C T G C T G A G T C A T C G A

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:9
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:AACTCAGGCGAGA---
-TCCCAGMCRAGCCCC
 C G T A C G T A A G T C A G C T A G T C C G T A A C T G A C T G G T A C A C T G G C T A A C T G T G C A A C G T A C G T A C G T
A C G T A G C T A G T C A G T C A G T C C T G A T C A G T G C A G A T C T C G A C G T A A C T G A T G C G T A C G T A C G A T C

TBX15/MA0803.1/Jaspar

Match Rank:10
Score:0.54
Offset:5
Orientation:forward strand
Alignment:AACTCAGGCGAGA
-----AGGTGTGA
 C G T A C G T A A G T C A G C T A G T C C G T A A C T G A C T G G T A C A C T G G C T A A C T G T G C A
A C G T A C G T A C G T A C G T A C G T C T G A C T A G T C A G A C G T A T C G A G C T A C T G C T G A