Information for 2-SCCATGCATG (Motif 3)

T A G C A G T C A T G C T C G A C A G T A T C G T A G C C T G A G A C T A T C G
Reverse Opposite:
A T G C C T G A G A C T A T C G T A G C G T C A A G C T T A C G T C A G A T C G
p-value:1e-17
log p-value:-3.936e+01
Information Content per bp:1.617
Number of Target Sequences with motif108.0
Percentage of Target Sequences with motif13.08%
Number of Background Sequences with motif2403.8
Percentage of Background Sequences with motif5.25%
Average Position of motif in Targets54.7 +/- 25.3bp
Average Position of motif in Background50.0 +/- 29.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.72
Offset:-3
Orientation:reverse strand
Alignment:---SCCATGCATG-
ATGCCCGGGCATGT
 A C G T A C G T A C G T T A G C A G T C A T G C T C G A C A G T A T C G T A G C C T G A G A C T A T C G A C G T
G T C A C G A T A C T G A G T C A G T C G A T C C T A G C T A G T C A G A T G C G C T A C G A T A T C G G A C T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:2
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---SCCATGCATG--
SCAGYCADGCATGAC
 A C G T A C G T A C G T T A G C A G T C A T G C T C G A C A G T A T C G T A G C C T G A G A C T A T C G A C G T A C G T
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---SCCATGCATG---
GCAGCCAAGCGTGACN
 A C G T A C G T A C G T T A G C A G T C A T G C T C G A C A G T A T C G T A G C C T G A G A C T A T C G A C G T A C G T A C G T
A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C

TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer

Match Rank:4
Score:0.66
Offset:1
Orientation:forward strand
Alignment:SCCATGCATG-
-CCWGGAATGY
 T A G C A G T C A T G C T C G A C A G T A T C G T A G C C T G A G A C T A T C G A C G T
A C G T A T G C G A T C C G A T C T A G A C T G G C T A C G T A A G C T A C T G A G C T

TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer

Match Rank:5
Score:0.63
Offset:1
Orientation:forward strand
Alignment:SCCATGCATG-
-CCWGGAATGY
 T A G C A G T C A T G C T C G A C A G T A T C G T A G C C T G A G A C T A T C G A C G T
A C G T T A G C T A G C G C A T C A T G A C T G G C T A C G T A A C G T A C T G G A T C

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:6
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:SCCATGCATG---
---TTGCGTGCVA
 T A G C A G T C A T G C T C G A C A G T A T C G T A G C C T G A G A C T A T C G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A G T A C T G A G T C T C A G C G A T C A T G G T A C T A G C C G T A

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:7
Score:0.63
Offset:2
Orientation:forward strand
Alignment:SCCATGCATG---
--AAGGCAAGTGT
 T A G C A G T C A T G C T C G A C A G T A T C G T A G C C T G A G A C T A T C G A C G T A C G T A C G T
A C G T A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:8
Score:0.62
Offset:4
Orientation:forward strand
Alignment:SCCATGCATG
----TGCGTG
 T A G C A G T C A T G C T C G A C A G T A T C G T A G C C T G A G A C T A T C G
A C G T A C G T A C G T A C G T G A C T A C T G A G T C A C T G A C G T A C T G

TP53/MA0106.3/Jaspar

Match Rank:9
Score:0.62
Offset:-6
Orientation:forward strand
Alignment:------SCCATGCATG--
AACATGCCCGGGCATGTC
 A C G T A C G T A C G T A C G T A C G T A C G T T A G C A G T C A T G C T C G A C A G T A T C G T A G C C T G A G A C T A T C G A C G T A C G T
C T G A C T G A G A T C C G T A G C A T T C A G G A T C G A T C A G T C C T A G C T A G C T A G A T G C G C T A G C A T C T A G G A C T G A T C

PB0206.1_Zic2_2/Jaspar

Match Rank:10
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--SCCATGCATG---
CCACACAGCAGGAGA
 A C G T A C G T T A G C A G T C A T G C T C G A C A G T A T C G T A G C C T G A G A C T A T C G A C G T A C G T A C G T
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A