Information for 5-AGATCACAACGGGAGA (Motif 21)

C G T A A C T G C G T A A C G T A G T C C G T A A G T C G C T A C G T A A G T C C T A G A C T G A C T G C G T A A C T G C G T A
Reverse Opposite:
A C G T A G T C A C G T A G T C A G T C A G T C C T A G A C G T C A G T A C T G C G A T A C T G C G T A A C G T A G T C A C G T
p-value:1e-3
log p-value:-8.735e+00
Information Content per bp:1.904
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif0.24%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets45.8 +/- 25.4bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)3.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NR4A2/MA0160.1/Jaspar

Match Rank:1
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-AGATCACAACGGGAGA
AAGGTCAC---------
 A C G T C G T A A C T G C G T A A C G T A G T C C G T A A G T C G C T A C G T A A G T C C T A G A C T G A C T G C G T A A C T G C G T A
C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Rarg(var.2)/MA0860.1/Jaspar

Match Rank:2
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-AGATCACAACGGGAGA
AAGGTCACGAAAGGTCA
 A C G T C G T A A C T G C G T A A C G T A G T C C G T A A G T C G C T A C G T A A G T C C T A G A C T G A C T G C G T A A C T G C G T A
C T G A T C G A A T C G A C T G A C G T G T A C T C G A G T A C A T C G T C G A T C G A T C G A A C T G A C T G G C A T G A T C T C G A

PB0207.1_Zic3_2/Jaspar

Match Rank:3
Score:0.53
Offset:1
Orientation:forward strand
Alignment:AGATCACAACGGGAGA
-GAGCACAGCAGGACA
 C G T A A C T G C G T A A C G T A G T C C G T A A G T C G C T A C G T A A G T C C T A G A C T G A C T G C G T A A C T G C G T A
A C G T C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

ZIC4/MA0751.1/Jaspar

Match Rank:4
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:AGATCACAACGGGAGA--
---NCNCAGCGGGGGGTC
 C G T A A C T G C G T A A C G T A G T C C G T A A G T C G C T A C G T A A G T C C T A G A C T G A C T G C G T A A C T G C G T A A C G T A C G T
A C G T A C G T A C G T C A T G T G A C C T G A G A T C G T C A T C A G G A T C C T A G C A T G C A T G C A T G C A T G C A T G A G C T T G A C

Nr1h3::Rxra/MA0494.1/Jaspar

Match Rank:5
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---AGATCACAACGGGAGA
NNGAGGTTACTNNAGGTCA
 A C G T A C G T A C G T C G T A A C T G C G T A A C G T A G T C C G T A A G T C G C T A C G T A A G T C C T A G A C T G A C T G C G T A A C T G C G T A
T G A C G T C A T C A G T C G A C A T G C A T G A G C T G A C T G C T A G A T C G A C T G A C T A G C T T C G A C T A G C A T G C A G T A G T C T C G A

PB0205.1_Zic1_2/Jaspar

Match Rank:6
Score:0.51
Offset:1
Orientation:forward strand
Alignment:AGATCACAACGGGAGA
-CCACACAGCAGGAGA
 C G T A A C T G C G T A A C G T A G T C C G T A A G T C G C T A C G T A A G T C C T A G A C T G A C T G C G T A A C T G C G T A
A C G T A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:7
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:AGATCACAACGGGAGA--
---DCHCAGCAGGRGGCC
 C G T A A C T G C G T A A C G T A G T C C G T A A G T C G C T A C G T A A G T C C T A G A C T G A C T G C G T A A C T G C G T A A C G T A C G T
A C G T A C G T A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

PB0206.1_Zic2_2/Jaspar

Match Rank:8
Score:0.51
Offset:1
Orientation:forward strand
Alignment:AGATCACAACGGGAGA
-CCACACAGCAGGAGA
 C G T A A C T G C G T A A C G T A G T C C G T A A G T C G C T A C G T A A G T C C T A G A C T G A C T G C G T A A C T G C G T A
A C G T G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0132.1_Hbp1_2/Jaspar

Match Rank:9
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:AGATCACAACGGGAGA-
NNTNNACAATGGGANNN
 C G T A A C T G C G T A A C G T A G T C C G T A A G T C G C T A C G T A A G T C C T A G A C T G A C T G C G T A A C T G C G T A A C G T
C G T A T A C G A G C T C G T A A G T C G T C A G T A C C G T A C G T A C G A T C T A G C T A G A C T G T C G A G T C A G A T C G C T A

PB0126.1_Gata5_2/Jaspar

Match Rank:10
Score:0.51
Offset:-5
Orientation:forward strand
Alignment:-----AGATCACAACGGGAGA
GACAGAGATATCAGTGT----
 A C G T A C G T A C G T A C G T A C G T C G T A A C T G C G T A A C G T A G T C C G T A A G T C G C T A C G T A A G T C C T A G A C T G A C T G C G T A A C T G C G T A
T C A G T G C A A G T C G T C A C T A G G T C A C A T G T C G A C A G T G T C A C A G T G A T C C G T A C T A G G A C T A C G T A C G T A C G T A C G T A C G T A C G T