Information for 9-CTCCAGTCAGCCG (Motif 11)

A G T C A C G T A G T C A G T C C G T A A C T G A C G T A G T C G T C A A C T G A G T C A G T C A C T G
Reverse Opposite:
A G T C A C T G A C T G A G T C A C G T A C T G G T C A A G T C C G A T A C T G A C T G C G T A A C T G
p-value:1e-8
log p-value:-1.926e+01
Information Content per bp:1.924
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.48%
Number of Background Sequences with motif1.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets54.5 +/- 15.8bp
Average Position of motif in Background29.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:CTCCAGTCAGCCG----
--SCAGYCADGCATGAC
 A G T C A C G T A G T C A G T C C G T A A C T G A C G T A G T C G T C A A C T G A G T C A G T C A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:2
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:CTCCAGTCAGCCG
--TGAGTCAGCA-
 A G T C A C G T A G T C A G T C C G T A A C T G A C G T A G T C G T C A A C T G A G T C A G T C A C T G
A C G T A C G T G A C T T A C G C G T A T A C G G A C T G T A C G C T A C T A G A G T C C T G A A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:CTCCAGTCAGCCG
--CCAGACAG---
 A G T C A C G T A G T C A G T C C G T A A C T G A C G T A G T C G T C A A C T G A G T C A G T C A C T G
A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:4
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---CTCCAGTCAGCCG-
CAAATCCAGACATCACA
 A C G T A C G T A C G T A G T C A C G T A G T C A G T C C G T A A C T G A C G T A G T C G T C A A C T G A G T C A G T C A C T G A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Mafb/MA0117.2/Jaspar

Match Rank:5
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:CTCCAGTCAGCCG---
----NGTCAGCANTTT
 A G T C A C G T A G T C A G T C C G T A A C T G A C G T A G T C G T C A A C T G A G T C A G T C A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G T C A T A C G A G C T G T A C C T G A C A T G T A G C C T G A G C A T C G A T G C A T G C A T

NRL/MA0842.1/Jaspar

Match Rank:6
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:CTCCAGTCAGCCG---
-----GTCAGCANNTN
 A G T C A C G T A G T C A G T C C G T A A C T G A C G T A G T C G T C A A C T G A G T C A G T C A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C A G C G A T G T A C C G T A C A T G A G T C C T G A C G T A C G T A G C A T G C A T

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:7
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:CTCCAGTCAGCCG-
--SCTGTCARCACC
 A G T C A C G T A G T C A G T C C G T A A C T G A C G T A G T C G T C A A C T G A G T C A G T C A C T G A C G T
A C G T A C G T T A G C G A T C C G A T C A T G G C A T A G T C G T C A C T G A A G T C C T G A T A G C A G T C

ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.52
Offset:5
Orientation:forward strand
Alignment:CTCCAGTCAGCCG-------
-----GTCWGCTGTYYCTCT
 A G T C A C G T A G T C A G T C C G T A A C T G A C G T A G T C G T C A A C T G A G T C A G T C A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T A G A C G T A G T C C G T A A C T G A G T C G C A T A C T G G C A T A G T C G A C T G A T C G C A T A G T C A G C T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:9
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:CTCCAGTCAGCCG
--VBTGWCAGCB-
 A G T C A C G T A G T C A G T C C G T A A C T G A C G T A G T C G T C A A C T G A G T C A G T C A C T G
A C G T A C G T T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:CTCCAGTCAGCCG
--CCAGACRSVB-
 A G T C A C G T A G T C A G T C C G T A A C T G A C G T A G T C G T C A A C T G A G T C A G T C A C T G
A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T