Information for 4-CGTGCCAGGG (Motif 4)

A G T C A C T G A C G T A C T G A G T C G T A C G T C A A C T G C T A G A C T G
Reverse Opposite:
A G T C A G T C G T A C A C G T A C T G A C T G A G T C C G T A A G T C A C T G
p-value:1e-17
log p-value:-4.054e+01
Information Content per bp:1.919
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.38%
Number of Background Sequences with motif5.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets60.2 +/- 13.0bp
Average Position of motif in Background56.8 +/- 18.1bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.67
Offset:1
Orientation:forward strand
Alignment:CGTGCCAGGG
-TTGCCAAG-
 A G T C A C T G A C G T A C T G A G T C G T A C G T C A A C T G C T A G A C T G
A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T

p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CGTGCCAGGG---
ACATGCCCGGGCAT
 A C G T A G T C A C T G A C G T A C T G A G T C G T A C G T C A A C T G C T A G A C T G A C G T A C G T A C G T
C T G A T A G C G C T A C G A T A T C G A G T C G A T C G A T C C T A G T C A G T C A G G T A C G C T A C A G T

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CGTGCCAGGG
CGTGCCAAG-
 A G T C A C T G A C G T A C T G A G T C G T A C G T C A A C T G C T A G A C T G
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:4
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---CGTGCCAGGG
RTACGTGC-----
 A C G T A C G T A C G T A G T C A C T G A C G T A C T G A G T C G T A C G T C A A C T G C T A G A C T G
C T G A C A G T C T G A A G T C C T A G G A C T A T C G G T A C A C G T A C G T A C G T A C G T A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:5
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---CGTGCCAGGG
TTGCGTGCVA---
 A C G T A C G T A C G T A G T C A C T G A C G T A C T G A G T C G T A C G T C A A C T G C T A G A C T G
A C G T C A G T A C T G A G T C T C A G C G A T C A T G G T A C T A G C C G T A A C G T A C G T A C G T

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:6
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CGTGCCAGGG
TACGTGCV----
 A C G T A C G T A G T C A C T G A C G T A C T G A G T C G T A C G T C A A C T G C T A G A C T G
A C G T C T G A G A T C A T C G G A C T T C A G G T A C T A G C A C G T A C G T A C G T A C G T

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:7
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---CGTGCCAGGG
GGACGTGC-----
 A C G T A C G T A C G T A G T C A C T G A C G T A C T G A G T C G T A C G T C A A C T G C T A G A C T G
T A C G A C T G T C G A A G T C A C T G A C G T A C T G T A G C A C G T A C G T A C G T A C G T A C G T

INSM1/MA0155.1/Jaspar

Match Rank:8
Score:0.66
Offset:2
Orientation:forward strand
Alignment:CGTGCCAGGG----
--TGTCAGGGGGCG
 A G T C A C T G A C G T A C T G A G T C G T A C G T C A A C T G C T A G A C T G A C G T A C G T A C G T A C G T
A C G T A C G T C A G T A C T G A G C T G T A C C G T A A C T G A T C G A C T G A C T G A C T G G A T C C T A G

Hes1/MA1099.1/Jaspar

Match Rank:9
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----CGTGCCAGGG
NNCGCGTGNN----
 A C G T A C G T A C G T A C G T A G T C A C T G A C G T A C T G A G T C G T A C G T C A A C T G C T A G A C T G
C A T G C T G A T G A C C T A G A G T C T C A G G A C T C T A G A T G C A T G C A C G T A C G T A C G T A C G T

HES5/MA0821.1/Jaspar

Match Rank:10
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----CGTGCCAGGG
CGGCACGTGCCA---
 A C G T A C G T A C G T A C G T A C G T A G T C A C T G A C G T A C T G A G T C G T A C G T C A A C T G C T A G A C T G
G A T C T C A G T C A G A G T C C T G A G A T C C T A G A G C T A C T G A G T C A G T C C T G A A C G T A C G T A C G T