Information for 2-CAGACATGTCCAA (Motif 3)

G T A C C G T A A C T G T G C A T G A C G T C A C A G T A T C G G A C T G A T C G T A C T G C A T C G A
Reverse Opposite:
A G C T A C G T A C T G C A T G C T G A T A G C G C T A C A G T A C T G A C G T T A G C C G A T C A T G
p-value:1e-20
log p-value:-4.683e+01
Information Content per bp:1.645
Number of Target Sequences with motif55.0
Percentage of Target Sequences with motif7.59%
Number of Background Sequences with motif718.2
Percentage of Background Sequences with motif1.58%
Average Position of motif in Targets49.8 +/- 27.6bp
Average Position of motif in Background49.4 +/- 34.0bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0060.1_Smad3_1/Jaspar

Match Rank:1
Score:0.64
Offset:-6
Orientation:forward strand
Alignment:------CAGACATGTCCAA
CAAATCCAGACATCACA--
 A C G T A C G T A C G T A C G T A C G T A C G T G T A C C G T A A C T G T G C A T G A C G T C A C A G T A T C G G A C T G A T C G T A C T G C A T C G A
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CAGACATGTCCAA
CCAGACRSVB----
 A C G T G T A C C G T A A C T G T G C A T G A C G T C A C A G T A T C G G A C T G A T C G T A C T G C A T C G A
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CAGACATGTCCAA
CCAGACAG------
 A C G T G T A C C G T A A C T G T G C A T G A C G T C A C A G T A T C G G A C T G A T C G T A C T G C A T C G A
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T

PH0086.1_Irx5/Jaspar

Match Rank:4
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CAGACATGTCCAA--
AATATACATGTAAAATT
 A C G T A C G T G T A C C G T A A C T G T G C A T G A C G T C A C A G T A T C G G A C T G A T C G T A C T G C A T C G A A C G T A C G T
C G A T C G T A C G A T G C T A C G A T G C T A A G T C C G T A G C A T T C A G C G A T G C T A G T C A C G T A C G T A A C G T C G A T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CAGACATGTCCAA
BCAGACWA------
 A C G T G T A C C G T A A C T G T G C A T G A C G T C A C A G T A T C G G A C T G A T C G T A C T G C A T C G A
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T

PH0085.1_Irx4/Jaspar

Match Rank:6
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CAGACATGTCCAA--
AATATACATGTAAAACA
 A C G T A C G T G T A C C G T A A C T G T G C A T G A C G T C A C A G T A T C G G A C T G A T C G T A C T G C A T C G A A C G T A C G T
C G T A C G T A G C A T C T G A C G A T C G T A A G T C C G T A G C A T C T A G G C A T G C T A G T C A C G T A C G T A A G T C C G T A

PH0083.1_Irx3_1/Jaspar

Match Rank:7
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CAGACATGTCCAA--
AAAATACATGTAATACT
 A C G T A C G T G T A C C G T A A C T G T G C A T G A C G T C A C A G T A T C G G A C T G A T C G T A C T G C A T C G A A C G T A C G T
C G T A C T G A C G A T C T G A C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A T G C A C G A T C G T A G A T C C G A T

PH0087.1_Irx6/Jaspar

Match Rank:8
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--CAGACATGTCCAA--
AAAATACATGTAAAAAT
 A C G T A C G T G T A C C G T A A C T G T G C A T G A C G T C A C A G T A T C G G A C T G A T C G T A C T G C A T C G A A C G T A C G T
G C T A G C T A G C T A C T G A C G A T C G T A A G T C C G T A G C A T C T A G C G A T G C T A G T C A C G T A C G T A G C T A C G A T

TP63/MA0525.2/Jaspar

Match Rank:9
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:CAGACATGTCCAA-------
--GACATGTCCCAACATGTT
 G T A C C G T A A C T G T G C A T G A C G T C A C A G T A T C G G A C T G A T C G T A C T G C A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C A T G C T G A A G T C C T G A G C A T A C T G G A C T G A T C T G A C A G T C C T G A C T G A A G T C C G T A G A C T A C T G G A C T G A C T

PH0082.1_Irx2/Jaspar

Match Rank:10
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--CAGACATGTCCAA--
TAAATACATGTAAAATT
 A C G T A C G T G T A C C G T A A C T G T G C A T G A C G T C A C A G T A T C G G A C T G A T C G T A C T G C A T C G A A C G T A C G T
C G A T C G T A C G T A C T G A C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A C G T A C T G A C G T A A C G T G C A T