Information for 19-GGGCAATTTGCCT (Motif 29)

A C T G A C T G A C T G A G T C C G T A C G T A A C G T A C G T A C G T A C T G A G T C A G T C A C G T
Reverse Opposite:
C G T A A C T G A C T G A G T C C G T A C G T A C G T A A C G T A C G T A C T G A G T C A G T C A G T C
p-value:1e-6
log p-value:-1.423e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.41%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets42.3 +/- 30.9bp
Average Position of motif in Background53.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:1
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GGGCAATTTGCCT
-GGGAATTTCC--
 A C T G A C T G A C T G A G T C C G T A C G T A A C G T A C G T A C G T A C T G A G T C A G T C A C G T
A C G T A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C A C G T A C G T

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:2
Score:0.62
Offset:5
Orientation:reverse strand
Alignment:GGGCAATTTGCCT--
-----ATTTGCATAT
 A C T G A C T G A C T G A G T C C G T A C G T A A C G T A C G T A C G T A C T G A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C T A C G A T G A C T A C G T C T A G G A T C G T C A C G A T C G T A C A G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.62
Offset:5
Orientation:forward strand
Alignment:GGGCAATTTGCCT--
-----ATTTGCATAA
 A C T G A C T G A C T G A G T C C G T A C G T A A C G T A C G T A C G T A C T G A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A A C G T A G C T C G A T C T A G G T A C C G T A A G C T C G T A G C T A

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:4
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:GGGCAATTTGCCT-
---NNACTTGCCTT
 A C T G A C T G A C T G A G T C C G T A C G T A A C G T A C G T A C G T A C T G A G T C A G T C A C G T A C G T
A C G T A C G T A C G T T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T

POU2F2/MA0507.1/Jaspar

Match Rank:5
Score:0.60
Offset:2
Orientation:forward strand
Alignment:GGGCAATTTGCCT--
--TTCATTTGCATAT
 A C T G A C T G A C T G A G T C C G T A C G T A A C G T A C G T A C G T A C T G A G T C A G T C A C G T A C G T A C G T
A C G T A C G T G A C T C A G T G T A C G C T A A C G T G C A T A C G T C T A G A G T C G T C A A G C T C T G A G C A T

PH0024.1_Dlx5/Jaspar

Match Rank:6
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GGGCAATTTGCCT--
GGGGTAATTAGCTCTG
 A C G T A C T G A C T G A C T G A G T C C G T A C G T A A C G T A C G T A C G T A C T G A G T C A G T C A C G T A C G T A C G T
A T C G A T C G T C A G T C A G G A C T G T C A C G T A G A C T C A G T C T G A T A C G A G T C A C G T T G A C A C G T A T C G

POU2F1/MA0785.1/Jaspar

Match Rank:7
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:GGGCAATTTGCCT---
----AATTTGCATANT
 A C T G A C T G A C T G A G T C C G T A C G T A A C G T A C G T A C G T A C T G A G T C A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G T C A G C T A G C A T G A C T G C A T T C A G G T A C T C G A G C A T C T G A G C A T C G A T

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GGGCAATTTGCCT-
CTTGGCANNNTGCCAA
 A C G T A C G T A C T G A C T G A C T G A G T C C G T A C G T A A C G T A C G T A C G T A C T G A G T C A G T C A C G T A C G T
A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A

Pou2f3/MA0627.1/Jaspar

Match Rank:9
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GGGCAATTTGCCT----
-TNTAATTTGCATACNA
 A C T G A C T G A C T G A G T C C G T A C G T A A C G T A C G T A C G T A C T G A G T C A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A

PH0145.1_Pou2f3/Jaspar

Match Rank:10
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GGGCAATTTGCCT----
-TNTAATTTGCATACNA
 A C T G A C T G A C T G A G T C C G T A C G T A A C G T A C G T A C G T A C T G A G T C A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A